Photocatalytic Formation of I-I Bonds Using DNA Which Enables Detection of Single Nucleotide Polymorphisms

被引:9
作者
Kawai, Kiyohiko [1 ]
Kodera, Haruka [1 ]
Majima, Tetsuro [1 ]
机构
[1] Osaka Univ, Inst Sci & Ind Res SANKEN, Osaka 5670047, Japan
关键词
DISTANCE CHARGE-TRANSPORT; HOLE-TRANSPORT; DUPLEX DNA; GUANINE OXIDATION; SEQUENCE VARIANTS; SEPARATED STATE; DAMAGE; MECHANISMS; MISMATCHES; ENERGETICS;
D O I
10.1021/ja105850d
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
By decreasing the HOMO energy gap between the base-pairs to increase the charge conductivity of DNA, the positive charge photochemically generated in DNA can be made to migrate along the pi-way of DNA over long distances to form a long-lived charge-separated state. By fine-tuning the kinetics of the charge-transfer reactions, we designed a functionalized DNA system in which absorbed photon energy is converted into chemical energy to form I-I covalent bonds, where more than 100 I-2 molecules were produced per functionalized DNA. Utilizing the fact that charge-transfer kinetics through DNA is sensitive to the presence of a single mismatch that causes the perturbation of the pi-stacks, single nucleotide polymorphisms (SNPs) in genomic sequences were detected by measuring the photon energy conversion efficiency in DNA by a conventional starch iodine method.
引用
收藏
页码:14216 / 14220
页数:5
相关论文
共 48 条
[31]   Sequence dependent long range hole transport in DNA [J].
Meggers, E ;
Michel-Beyerle, ME ;
Giese, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (49) :12950-12955
[32]   Modulation of DNA-mediated hole-transport efficiency by changing superexchange electronic interaction [J].
Nakatani, K ;
Dohno, C ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (24) :5893-5894
[33]   Chemistry of sequence-dependent remote guanine oxidation: Photoreaction of duplex DNA containing cyanobenzophenone-substituted uridine [J].
Nakatani, K ;
Dohno, C ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (46) :10854-10855
[34]   Suppression of DNA-mediated charge transport by BamHI binding [J].
Nakatani, K ;
Dohno, C ;
Ogawa, A ;
Saito, I .
CHEMISTRY & BIOLOGY, 2002, 9 (03) :361-366
[35]   Long-range oxidative damage to DNA:: effects of distance and sequence [J].
Núñez, ME ;
Hall, DB ;
Barton, JK .
CHEMISTRY & BIOLOGY, 1999, 6 (02) :85-97
[36]   DNA hole transport on an electrode: Application to effective photoelectrochemical SNP typing [J].
Okamoto, A ;
Kamei, T ;
Saito, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (02) :658-662
[37]   Kinetics of charge transfer in DNA containing a mismatch [J].
Osakada, Yasuko ;
Kawai, Kiyohiko ;
Fujitsuka, Mamoru ;
Majima, Tetsuro .
NUCLEIC ACIDS RESEARCH, 2008, 36 (17) :5562-5570
[38]   Charge transfer through DNA nanoscaled assembly programmable with DNA building blocks [J].
Osakada, Yasuko ;
Kawai, Kiyohiko ;
Fujitsuka, Mamoru ;
Majima, Tetsuro .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (48) :18072-18076
[39]   Folding DNA to create nanoscale shapes and patterns [J].
Rothemund, PWK .
NATURE, 2006, 440 (7082) :297-302
[40]   Long-distance charge transport in DNA: Sequence-dependent radical cation injection efficiency [J].
Sanii, L ;
Schuster, GB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (46) :11545-11546