Expansion and evolution of thaumatin-like protein (TLP) gene family in six plants

被引:51
作者
Cao, Jun [1 ]
Lv, Yueqing [1 ]
Hou, Zuoran [1 ]
Li, Xiang [1 ]
Ding, Lina [1 ]
机构
[1] Jiangsu Univ, Inst Life Sci, Zhenjiang 212013, Peoples R China
基金
美国国家科学基金会;
关键词
Thaumatin-like protein; Expansion; Evolution; Gene expression; PHYLOGENETIC ANALYSIS; ENHANCES RESISTANCE; DEFENSE RESPONSE; CLUSTER-ANALYSIS; TOBACCO OSMOTIN; EXPRESSION; OVEREXPRESSION; ARABIDOPSIS; STRESSES; RICE;
D O I
10.1007/s10725-015-0134-y
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Thaumatin-like protein (TLP) is one of pathogenesis-related protein family, which plays an important role in plant defense system. While its origin and expansion is unknown in plants. Here, we investigated the evolution of this gene family by performing a genome-wide identification and comparison in Arabidopsis, Oryza, Populus, Zea, Physcomitrella and Chlamydomonas. We found a birth process of this gene family in evolution. Tandem and segmental duplication played dominant roles for their expansion. In addition, TLPs were under purifying selection, and most members were responding to some biotic or abiotic stresses. Functional network analysis exhibited some resistance genes working together with TLPs. Our findings shed some light on this family gene evolution in plants, which might provide a base for further functional investigation of this family.
引用
收藏
页码:299 / 307
页数:9
相关论文
共 61 条
[1]   Antifungal activity of tobacco osmotin has specificity and involves plasma membrane permeabilization [J].
Abad, LR ;
DUrzo, MP ;
Liu, D ;
Narasimhan, ML ;
Reuveni, M ;
Zhu, JK ;
Niu, XM ;
Singh, NK ;
Hasegawa, PM ;
Bressan, RA .
PLANT SCIENCE, 1996, 118 (01) :11-23
[2]   Overexpression of Camellia sinensis Thaumatin-Like Protein, CsTLP in Potato Confers Enhanced Resistance to Macrophomina phaseolina and Phytophthora infestans Infection [J].
Acharya, Karan ;
Pal, Awadhesh K. ;
Gulati, Arvind ;
Kumar, Sanjay ;
Singh, Anil K. ;
Ahuja, Paramvir S. .
MOLECULAR BIOTECHNOLOGY, 2013, 54 (02) :609-622
[3]   Overexpression of rice NAC gene SNAC1 in ramie improves drought and salt tolerance [J].
An, Xia ;
Liao, Yiwen ;
Zhang, Jingyu ;
Dai, Lunjin ;
Zhang, Na ;
Wang, Bo ;
Liu, Lijun ;
Peng, Dingxiang .
PLANT GROWTH REGULATION, 2015, 76 (02) :211-223
[4]   Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays [J].
Cao, Jun ;
Li, Xiang ;
Lv, Yueqing ;
Ding, Lina .
FRONTIERS IN PLANT SCIENCE, 2015, 6
[5]   Identification and phylogenetic analysis of late embryogenesis abundant proteins family in tomato (Solanum lycopersicum) [J].
Cao, Jun ;
Li, Xiang .
PLANTA, 2015, 241 (03) :757-772
[6]   NOTUNG: A program for dating gene duplications and optimizing gene family trees [J].
Chen, K ;
Durand, D ;
Farach-Colton, M .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (3-4) :429-447
[7]   Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from Arabidopsis [J].
Chen, KG ;
Fan, BF ;
Du, LQ ;
Chen, ZX .
PLANT MOLECULAR BIOLOGY, 2004, 56 (02) :271-283
[8]   Small auxin upregulated RNA (SAUR) gene family in maize: Identification, evolution, and its phylogenetic comparison with Arabidopsis, rice, and sorghum [J].
Chen, Yuzhu ;
Hao, Xi ;
Cao, Jun .
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2014, 56 (02) :133-150
[9]   Temperature-induced lipocalin is required for basal and acquired thermotolerance in Arabidopsis [J].
Chi, Wen-Tzu ;
Fung, Raymondw. M. ;
Liu, Hsiang-Chin ;
Hsu, Ching-Chi ;
Charng, Yee-Yung .
PLANT CELL AND ENVIRONMENT, 2009, 32 (07) :917-927
[10]   PLEXdb: gene expression resources for plants and plant pathogens [J].
Dash, Sudhansu ;
Van Hemert, John ;
Hong, Lu ;
Wise, Roger P. ;
Dickerson, Julie A. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D1194-D1201