The complete chloroplast genome of Notholition macrophyllum

被引：3

作者：

Li, Juan ^{[1
]}

Liu, Haiying ^{[1
]}

Xie, Dengfeng ^{[1
]}

Zhou, Songdong ^{[1
]}

He, Xingjin ^{[1
]}

机构：

[1] Sichuan Univ, Coll Life Sci, Key Lab Bioresources & Ecoenvironm, Minist Educ, Chengdu, Sichuan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Chloroplast; genome; Notholirion;

D O I：

10.1080/23802359.2018.1463825

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Notholirion macrophyllum (D. Don) Boiss. (Liliaceae) is a floriferous species naturally distributed in Asia. The complete chloroplast genome sequence of N. macrophyllum was generated by de novo assembly using whole genome next generation sequencing data. The complete chloroplast genome of N. macrophyllum was 152143bp in total sequence length and divided into four distinct regions: small single copy region (17913bp), large single copy region (82222bp) and a pair of inverted repeat regions (26004bp). The genome annotation displayed a total of 135 genes, including 82 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Phylogenetic analysis with 7 Liliaceae species revealed that N. macrophyllum was the basal species of tribe Lilieae and was close to Cardiocrinum giganteum.

引用

页码：1102 / 1103

页数：2

共 11 条

[1]

[Anonymous], 2008, THESIS

[2] Evolutionary events in Lilium (including Nomocharis, Liliaceae) are temporally correlated with orogenies of the Q-T plateau and the Hengduan Mountains [J].

Gao, Yun-Dong ;

Harris, A. J. ;

Zhou, Song-Dong ;

He, Xing-Jin .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 68 (03) :443-460

[3] Chromosome diversity and evolution in tribe Lilieae (Liliaceae) with emphasis on Chinese species [J].

Gao, Yun-Dong ;

Zhou, Song-Dong ;

He, Xing-Jin ;

Wan, Juan .

JOURNAL OF PLANT RESEARCH, 2012, 125 (01) :55-69

[4] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[5]

Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]

[6]

Liang S, 2000, FLORA CHINA, V24, P133

[7]

Liang S. Y., 1995, ACTA PHYTOTAX SINICA, V33, P27

[8] SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler [J].

Luo, Ruibang ;

Liu, Binghang ;

Xie, Yinlong ;

Li, Zhenyu ;

Huang, Weihua ;

Yuan, Jianying ;

He, Guangzhu ;

Chen, Yanxiang ;

Pan, Qi ;

Liu, Yunjie ;

Tang, Jingbo ;

Wu, Gengxiong ;

Zhang, Hao ;

Shi, Yujian ;

Liu, Yong ;

Yu, Chang ;

Wang, Bo ;

Lu, Yao ;

Han, Changlei ;

Cheung, David W. ;

Yiu, Siu-Ming ;

Peng, Shaoliang ;

Zhu Xiaoqian ;

Liu, Guangming ;

Liao, Xiangke ;

Li, Yingrui ;

Yang, Huanming ;

Wang, Jian ;

Lam, Tak-Wah ;

Wang, Jun .

GIGASCIENCE, 2012, 1

[9] Using Tablet for visual exploration of second-generation sequencing data [J].

Milne, Iain ;

Stephen, Gordon ;

Bayer, Micha ;

Cock, Peter J. A. ;

Pritchard, Leighton ;

Cardle, Linda ;

Shaw, Paul D. ;

Marshall, David .

BRIEFINGS IN BIOINFORMATICS, 2013, 14 (02) :193-202

[10]

Takhtajan A., 1987, SYSTEMA MAGNOLIOPHYT

← 1 2 →