CREATE: a software to create input files from diploid genotypic data for 52 genetic software programs

被引：142

作者：

Coombs, J. A. ^{[1
]}

Letcher, B. H. ^{[2
]}

Nislow, K. H. ^{[3
]}

机构：

[1] Univ Massachusetts, Program Organism & Evolutionary Biol, Amherst, MA 01003 USA

[2] US Geol Survey, Leetown Sci Ctr, SO Conte Anadromous Fish Res Ctr, Turners Falls, MA 01376 USA

[3] Univ Massachusetts, US Forest Serv, No Expt Res Stn, Amherst, MA 01003 USA

来源：

MOLECULAR ECOLOGY RESOURCES | 2008年 / 8卷 / 03期

关键词：

computer program; file conversion; file creation; parentage assignment; population genetics; sibship reconstruction;

D O I：

10.1111/j.1471-8286.2007.02036.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

CREATE is a Windows program for the creation of new and conversion of existing data input files for 52 genetic data analysis software programs. Programs are grouped into areas of sibship reconstruction, parentage assignment, genetic data analysis, and specialized applications. CREATE is able to read in data from text, Microsoft Excel and Access sources and allows the user to specify columns containing individual and population identifiers, birth and death data, sex data, relationship information, and spatial location data. CREATE's only constraints on source data are that one individual is contained in one row, and the genotypic data is contiguous. CREATE is available for download at http://www.lsc.usgs.gov/CAFL/Ecology/Software.html.

引用

页码：578 / 580

页数：3

共 58 条

[1] Estimation of single-generation sibling relationships based on DNA markers [J].

Almudevar, A ;

Field, C .

JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS, 1999, 4 (02) :136-165

[2] A graphical approach to relatedness inference [J].

Almudevar, Anthony .

THEORETICAL POPULATION BIOLOGY, 2007, 71 (02) :213-229

[3] An efficient Monte Carlo method for estimating Ne from temporally spaced samples using a coalescent-based likelihood [J].

Anderson, EC .

GENETICS, 2005, 170 (02) :955-967

[4]

Anderson EC, 2002, GENETICS, V160, P1217

[5]

[Anonymous], 2004, PHYLIP PHYLOGENY INF

[6] Which genetic loci have greater population assignment power? [J].

Banks, MA ;

Eichert, W ;

Olsen, JB .

BIOINFORMATICS, 2003, 19 (11) :1436-1438

[7] WHICHRUN (version 3.2): A computer program for population assignment of individuals based on multilocus genotype data [J].

Banks, MA ;

Eichert, W .

JOURNAL OF HEREDITY, 2000, 91 (01) :87-89

[8]

Beaumont MA, 1999, GENETICS, V153, P2013

[9]

Beaumont MA, 2003, GENETICS, V164, P1139

[10] Evaluating loci for use in the genetic analysis of population structure [J].

Beaumont, MA ;

Nichols, RA .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1996, 263 (1377) :1619-1626

← 1 2 3 4 5 6 →