Efficient evaluation of electrostatic potential with computerized optimized code

被引:1489
作者
Zhang, Jun [1 ]
Lu, Tian [2 ]
机构
[1] Shenzhen Bay Lab, Inst Syst & Phys Biol, Shenzhen 518055, Peoples R China
[2] Beijing Kein Res Ctr Nat Sci, Beijing 100022, Peoples R China
关键词
ATOMIC CHARGES; BIOLOGICAL INTERFACES; MOLECULAR-MECHANICS; FREE-ENERGIES; WAVE-FUNCTION; SURFACE; TEMPERATURE; GENERATION; SOLVATION; QUALITY;
D O I
10.1039/d1cp02805g
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The evaluation of molecular electrostatic potential (ESP) is a performance bottleneck for many computational chemical tasks like restrained ESP charge fitting or quantum mechanics/molecular mechanics simulations. In this paper, an efficient algorithm for the evaluation of ESP is proposed. It regroups the expression in terms of primitive Gaussian type orbitals (GTOs) with identical angular momentum types and nuclei centers. Each term is calculated using a computerized optimized code. This algorithm was integrated into the wavefunction analysis program Multiwfn and was tested on several large systems. In the cases of dopamine and remdesivir, the performance of this algorithm was comparable to or better than some popular state-of-the-art codes. For meta1-organic framework-5, where the number of GTOs and ESP points is 4840 and 259 262, respectively, our code could finish the evaluation in 1874 seconds on ordinary hardware. It also exhibits good parallelization scaling. The source code of this algorithm is freely available and can become a useful tool for computational chemists.
引用
收藏
页码:20323 / 20328
页数:6
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