Control of Large-Scale Boolean Networks via Network Aggregation

被引:69
作者
Zhao, Yin [1 ]
Ghosh, Bijoy K. [2 ]
Cheng, Daizhan [1 ]
机构
[1] Chinese Acad Sci, Acad Math & Syst Sci, Inst Syst Sci, Key Lab Syst & Control, Beijing 100190, Peoples R China
[2] Texas Tech Univ, Dept Math & Stat, Ctr BioCybernet & Intelligent Syst, Lubbock, TX 79409 USA
基金
美国国家科学基金会; 中国国家自然科学基金;
关键词
Acyclic aggregation; Boolean control network (BCN); controllability; graph aggregation; stabilizability; STABILITY; CONTROLLABILITY; ALGORITHMS;
D O I
10.1109/TNNLS.2015.2442593
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
A major challenge to solve problems in control of Boolean networks is that the computational cost increases exponentially when the number of nodes in the network increases. We consider the problem of controllability and stabilizability of Boolean control networks, address the increasing cost problem by partitioning the network graph into several subnetworks, and analyze the subnetworks separately. Easily verifiable necessary conditions for controllability and stabilizability are proposed for a general aggregation structure. For acyclic aggregation, we develop a sufficient condition for stabilizability. It dramatically reduces the computational complexity if the number of nodes in each block of the acyclic aggregation is small enough compared with the number of nodes in the entire Boolean network.
引用
收藏
页码:1527 / 1536
页数:10
相关论文
共 26 条
[1]   Control of Boolean networks: Hardness results and algorithms for tree structured networks [J].
Akutsu, Tatsuya ;
Hayashida, Morihiro ;
Ching, Wai-Ki ;
Ng, Michael K. .
JOURNAL OF THEORETICAL BIOLOGY, 2007, 244 (04) :670-679
[2]   DISCRETE DYNAMIC MODELING OF CELLULAR SIGNALING NETWORKS [J].
Albert, Reka ;
Wang, Rui-Sheng .
METHODS IN ENZYMOLOGY: COMPUTER METHODS, PART B, 2009, 467 :281-306
[3]   Scalable Steady State Analysis of Boolean Biological Regulatory Networks [J].
Ay, Ferhat ;
Xu, Fei ;
Kahveci, Tamer .
PLOS ONE, 2009, 4 (12)
[4]   Identification of Boolean control networks [J].
Cheng, Daizhan ;
Zhao, Yin .
AUTOMATICA, 2011, 47 (04) :702-710
[5]   Model Construction of Boolean Network via Observed Data [J].
Cheng, Daizhan ;
Qi, Hongsheng ;
Li, Zhiqiang .
IEEE TRANSACTIONS ON NEURAL NETWORKS, 2011, 22 (04) :525-536
[6]   Stability and stabilization of Boolean networks [J].
Cheng, Daizhan ;
Qi, Hongsheng ;
Li, Zhiqiang ;
Liu, Jiang B. .
INTERNATIONAL JOURNAL OF ROBUST AND NONLINEAR CONTROL, 2011, 21 (02) :134-156
[7]   A Linear Representation of Dynamics of Boolean Networks [J].
Cheng, Daizhan ;
Qi, Hongsheng .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 2010, 55 (10) :2251-2258
[8]   Controllability and observability of Boolean control networks [J].
Cheng, Daizhan ;
Qi, Hongsheng .
AUTOMATICA, 2009, 45 (07) :1659-1667
[9]  
Cheng DH, 2011, COMMUN CONTROL ENG, P1, DOI 10.1007/978-0-85729-097-7
[10]   External control in Markovian genetic regulatory networks: the imperfect information case [J].
Datta, A ;
Choudhary, A ;
Bittner, ML ;
Dougherty, ER .
BIOINFORMATICS, 2004, 20 (06) :924-930