The peach genome

被引:112
作者
Arus, Pere [1 ]
Verde, Ignazio [2 ]
Sosinski, Bryon [3 ]
Zhebentyayeva, Tatyana [4 ]
Abbott, Albert G. [4 ]
机构
[1] UB, UAB, IRTA, Ctr Recerca Agrigen,CSIC, Barcelona 08193, Spain
[2] Fruit Tree Res Ctr, CRA, I-00134 Rome, Italy
[3] N Carolina State Univ, Dept Hort Sci, Raleigh, NC 27695 USA
[4] Clemson Univ, Dept Biochem & Genet, Clemson, SC 29634 USA
关键词
Prunus; Genomics; Breeding; Map; Sequence; GENETIC-LINKAGE MAP; PLUM-POX-VIRUS; POWDERY MILDEW RESISTANCE; PRUNUS-PERSICA; PROTEOMIC ANALYSIS; CANDIDATE GENES; PHYSICAL MAP; CHILLING REQUIREMENT; SYNTENY CONSERVATION; ROSACEAE GENOMICS;
D O I
10.1007/s11295-012-0493-8
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
The peach [Prunus persica (L.) Batsch] genome sequence has been recently made available to the scientific community. This represents the culmination of a long process that started less than two decades ago with the release of the first marker-based linkage maps. The process has advanced rapidly with the studies of molecular diversity, detection of genome positions of major genes and quantitative trait loci, development of large DNA sequence collections, transcriptome and proteome analyses, comparative genomic studies, construction of a physical map, and development of databases where researchers can access information. The growth of genomics knowledge has been partly due to the simplicity of the peach genome: short (230 Mbp), diploid, and distributed on eight pairs of chromosomes. Its unusually short intergeneration period (2-4 years) and selfing mating behavior, plus a dynamic peach scientific community that has often collaborated in the development of the necessary tools, have also facilitated in constructing a robust sequence of its complete genome. Peach is one of the best known species genetically among tree crops, with the promise of rapid advancement in the next few years. This paper reviews the resources available and the main results obtained, with emphasis placed on application to the development of improved varieties.
引用
收藏
页码:531 / 547
页数:17
相关论文
共 120 条
[11]   Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation [J].
Bielenberg, Douglas Gary ;
Wang, Ying ;
Li, Zhigang ;
Zhebentyayeva, Tetyana ;
Fan, Shenghua ;
Reighard, Gregory Lynn ;
Scorza, Ralph ;
Abbott, Albert Glenn .
TREE GENETICS & GENOMES, 2008, 4 (03) :495-507
[12]   An expanded genetic linkage map of Prunus based on an interspecific cross between almond and peach [J].
Bliss, FA ;
Arulsekar, S ;
Foolad, MR ;
Becerra, V ;
Gillen, AM ;
Warburton, ML ;
Dandekar, AM ;
Kocsisne, GM ;
Mydin, KK .
GENOME, 2002, 45 (03) :520-529
[13]   Carbon metabolism of peach fruit after harvest: changes in enzymes involved in organic acid and sugar level modifications [J].
Borsani, Julia ;
Budde, Claudio O. ;
Porrini, Lucia ;
Lauxmann, Martin A. ;
Lombardo, Veronica A. ;
Murray, Ricardo ;
Andreo, Carlos S. ;
Drincovich, Maria F. ;
Lara, Maria V. .
JOURNAL OF EXPERIMENTAL BOTANY, 2009, 60 (06) :1823-1837
[14]   Phenotypic and fine genetic characterization of the D locus controlling fruit acidity in peach [J].
Boudehri, Karima ;
Bendahmane, Abdelhafid ;
Cardinet, Gaelle ;
Troadec, Christelle ;
Moing, Annick ;
Dirlewanger, Elisabeth .
BMC PLANT BIOLOGY, 2009, 9
[15]   ISOZYME VARIABILITY IN 4 DIPLOID STONE FRUITS COMPARED WITH OTHER WOODY PERENNIAL PLANTS [J].
BYRNE, DH .
JOURNAL OF HEREDITY, 1990, 81 (01) :68-71
[16]   Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers [J].
Cabrera, Antonio ;
Kozik, Alex ;
Howad, Werner ;
Arus, Pere ;
Iezzoni, Amy F. ;
van der Knaap, Esther .
BMC GENOMICS, 2009, 10
[17]   Chilling injury susceptibility in an intra-specific peach [Prunus persica (L.) Batsch] progeny [J].
Cantin, C. M. ;
Crisosto, C. H. ;
Ogundiwin, E. A. ;
Gradziel, T. ;
Torrents, J. ;
Moreno, M. A. ;
Gogorcena, Y. .
POSTHARVEST BIOLOGY AND TECHNOLOGY, 2010, 58 (02) :79-87
[18]   Proteome approach to characterize proteins induced by antagonist yeast and salicylic acid in peach fruit [J].
Chan, Zhulong ;
Qin, Guozheng ;
Xu, Xiangbin ;
Li, Boqiang ;
Tian, Shiping .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (05) :1677-1688
[19]   TARGETED MAPPING AND LINKAGE ANALYSIS OF MORPHOLOGICAL ISOZYME, AND RAPD MARKERS IN PEACH [J].
CHAPARRO, JX ;
WERNER, DJ ;
OMALLEY, D ;
SEDEROFF, RR .
THEORETICAL AND APPLIED GENETICS, 1994, 87 (07) :805-815
[20]   Genomic characterization of putative allergen genes in peach/almond and their synteny with apple [J].
Chen, Lin ;
Zhang, Shuiming ;
Illa, Eudald ;
Song, Lijuan ;
Wu, Shandong ;
Howad, Werner ;
Arus, Pere ;
van de Weg, Eric ;
Chen, Kunsong ;
Gao, Zhongshan .
BMC GENOMICS, 2008, 9 (1)