The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life

被引：74

作者：

Zhou, Xin ^{[1
,2
]}

Frandsen, Paul B. ^{[3
]}

Holzenthal, Ralph W. ^{[4
]}

Beet, Clare R. ^{[5
]}

Bennett, Kristi R. ^{[5
]}

Blahnik, Roger J. ^{[4
]}

Bonada, Nuria ^{[6
]}

Cartwright, David ^{[7
]}

Chuluunbat, Suvdtsetseg ^{[8
]}

Cocks, Graeme V. ^{[9
]}

Collins, Gemma E. ^{[5
]}

deWaard, Jeremy ^{[10
]}

Dean, John ^{[11
]}

Flint, Oliver S., Jr. ^{[12
]}

Hausmann, Axel ^{[13
]}

Hendrich, Lars ^{[13
]}

Hess, Monika ^{[14
]}

Hogg, Ian D. ^{[5
]}

Kondratieff, Boris C. ^{[15
]}

Malicky, Hans ^{[16
]}

Milton, Megan A. ^{[10
]}

Moriniere, Jerome ^{[13
]}

Morse, John C. ^{[17
]}

Mwangi, Francois Ngera ^{[18
]}

Pauls, Steffen U. ^{[19
]}

Razo Gonzalez, Maria ^{[20
]}

Rinne, Aki ^{[21
]}

Robinson, Jason L. ^{[22
]}

Salokannel, Juha ^{[23
]}

Shackleton, Michael ^{[24
]}

Smith, Brian ^{[25
]}

Stamatakis, Alexandros ^{[26
,27
]}

StClair, Ros ^{[11
]}

Thomas, Jessica A. ^{[28
]}

Zamora-Munoz, Carmen ^{[29
]}

Ziesmann, Tanja ^{[30
]}

Kjer, Karl M. ^{[31
]}

机构：

[1] China Agr Univ, Beijing Adv Innovat Ctr Food Nutr & Human Hlth, Beijing 100193, Peoples R China

[2] China Agr Univ, Coll Food Sci & Nutr Engn, Beijing 100083, Peoples R China

[3] Smithsonian Inst, Off Res Informat Serv, Off Chief Informat Officer, POB 37012, Washington, DC 20013 USA

[4] Univ Minnesota, Dept Entomol, 1980 Folwell Ave, St Paul, MN 55108 USA

[5] Univ Waikato, Sch Sci, Private Bag 3105, Hamilton 3240, New Zealand

[6] Univ Barcelona, Fac Biol, Grp Recerca Freshwater Ecol & Management FEM, Inst Recerca Biodiversitat IRBio,Dept Ecol, Diagonal 643, E-08028 Barcelona, Catalonia, Spain

[7] 13 Brolga Crescent, Wandana Hts, Vic 3216, Australia

[8] Mongolian Natl Univ Educ, Dept Biol, 3rd Palace,Beijing St, Ulaanbaatar 14191, Mongolia

[9] 44 Marks St, Hermit Pk, Qld 4812, Australia

[10] Univ Guelph, Ctr Biodivers Genom, Biodivers Inst Ontario, Guelph, ON N1G 2W1, Canada

[11] Environm Protect Author Victoria, Ernest Jones Dr, Macleod, Vic 3085, Australia

[12] Smithsonian Inst, Natl Museum Nat Hist, Dept Entomol, Washington, DC 20013 USA

[13] SNSB Bavarian State Collect Zool, Munchhausenstr 21, D-81247 Munich, Germany

[14] Hess Heckes GbR, Buro Okol Gutachten H2, Rumfordstr 42, D-80469 Munich, Germany

[15] Colorado State Univ, Dept Bioagr Sci & Pest Management, 1177 Campus Delivery, Ft Collins, CO 80523 USA

[16] Austrian Acad Sci, Biol Stn Lunz, A-3293 Lunz, Austria

[17] Clemson Univ, Dept Plant & Environm Sci, POB 340310, Clemson, SC 29634 USA

[18] Ctr Rech Sci Nat Lwiro, Po Ds Bukavu, DEM REP CONGO

[19] Senckenberg Biodivers & Climate Res Ctr, Senckenberganlage 25, D-60325 Frankfurt, Germany

[20] Univ Nacl Autonoma Mexico, Fac Ciencias, Unidad Multidisciplinaria Docencia & Invest, Campus Juriquilla, Queretaro 76230, Mexico

[21] Finnish Environm Inst, Merikasarminkatu 8, Helsinki 00160, Finland

[22] Univ Illinois, Illinois Nat Hist Survey, Prairie Res Inst, 1816 S Oak St,MC 652, Champaign, IL 61820 USA

[23] Aquat Insects Expert Grp Finland, Siikinkatu 13, Tampere 33710, Finland

[24] La Trobe Univ, Murray Darling Freshwater Res Ctr, 133 McKoy St, Wodonga, Vic 3691, Australia

[25] Natl Inst Water & Atmospher Res, POB 11115, Hamilton 3240, New Zealand

[26] HITS, Sci Comp Grp, D-69118 Heidelberg, Germany

[27] Karlsruhe Inst Technol, Inst Informat Theory & Automat, Inst Theoret Informat, Karlsruhe 35, D-69118 Heidelberg, Germany

[28] Univ York, Dept Biol, BioArch, Environm Bldg, York Y010 5DD, N Yorkshire, England

[29] Univ Granada, Fac Sci, Dept Zool, C Severo Ochoa S-N, E-18071 Granada, Spain

[30] ZMB, Zool Forsch Museum Alexander Koenig ZFMK, Bonn 5, D-76131 Karlsruhe, Germany

[31] Univ Calif Davis, Dept Entomol & Nematol, 1282 Acad Surge, Davis, CA 95616 USA

来源：

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES | 2016年 / 371卷 / 1702期

基金：

芬兰科学院; 美国国家科学基金会; 奥地利科学基金会;

关键词：

DNA barcodes; caddisfly; phylogeny; integrative taxonomy; PHYLOGENETIC ANALYSIS; CADDISFLIES INSECTA; CRYPTIC DIVERSITY; DNA; MITOCHONDRIAL; HYDROPSYCHIDAE; IDENTIFICATION; LIMNEPHILIDAE; LEPIDOPTERA; MORPHOLOGY;

D O I：

10.1098/rstb.2016.0025

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

DNA barcoding was intended as a means to provide species-level identifications through associating DNA sequences from unknown specimens to those from curated reference specimens. Although barcodes were not designed for phylogenetics, they can be beneficial to the completion of the Tree of Life. The barcode database for Trichoptera is relatively comprehensive, with data from every family, approximately two-thirds of the genera, and one-third of the described species. Most Trichoptera, as with most of life's species, have never been subjected to any formal phylogenetic analysis. Here, we present a phylogeny with over 16 000 unique haplotypes as a working hypothesis that can be updated as our estimates improve. We suggest a strategy of implementing constrained tree searches, which allow larger datasets to dictate the backbone phylogeny, while the barcode data fill out the tips of the tree. We also discuss how this phylogeny could be used to focus taxonomic attention on ambiguous species boundaries and hidden biodiversity. We suggest that systematists continue to differentiate between 'Barcode Index Numbers' (BINs) and 'species' that have been formally described. Each has utility, but they are not synonyms. We highlight examples of integrative taxonomy, using both barcodes and morphology for species description. This article is part of the themed issue 'From DNA barcodes to biomes'.

引用

页数：11

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