Cation [M = H+, Li+, Na+, K+, Ca2+, Mg2+, NH4+, and NMe4+] interactions with the aromatic motifs of naturally occurring amino acids:: A theoretical study

被引:275
作者
Reddy, AS [1 ]
Sastry, GN [1 ]
机构
[1] Indian Inst Chem Technol, Mol Modeling Grp, Hyderabad 500007, Andhra Pradesh, India
关键词
D O I
10.1021/jp0525179
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Ab initio (HF, MP2, and CCSD(T)) and DFT (B3LYP) calculations were done in modeling the cation (H+, Li+, Na+, K+, Ca2+, Mg2+, NH4+, and NMe4+) interaction with aromatic side chain motifs of four amino acids (viz., phenylalanine, tyrosine, tryptophan and histidine). As the metal ion approaches the pi-framework of the model systems, they form strongly bound cation-pi complexes, where the metal ion is symmetrically disposed with respect to all ring atoms. In contrast, proton prefers to bind covalently to one of the ring carbons. The NH4+ and NMe4+ ions have shown N-H center dot center dot center dot pi interaction and C-H center dot center dot center dot pi interaction with the aromatic motifs. The interaction energies of N-H center dot center dot center dot pi and C-H center dot center dot center dot pi complexes are higher than hydrogen bonding interactions; thus, the orientation of aromatic side chains in protein is effected in the presence of ammonium ions. However, the regioselectivity of metal ion complexation is controlled by the affinity of the site of attack. In the imidazole unit of histidine the ring nitrogen has much higher metal ion (as well as proton) affinity as compared to the pi-face, facilitating the in-plane complexation of the metal ions. The interaction energies increase in the order of 1-M < 2-M < 3-M < 4-M < 5-M for all the metal ion considered. Similarly, the complexation energies with the model systems decrease in the following order: Mg2+ > Ca2+ > Li+ > Na+ > K+ congruent to NH4+ > NMe4+. The variation of the bond lengths and the extent of charge transfer upon complexation correlate well with the computed interaction energies.
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收藏
页码:8893 / 8903
页数:11
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共 61 条
[1]   Absolute binding energies of alkali-metal cation complexes with benzene determined by threshold collision-induced dissociation experiments and ab initio theory [J].
Amicangelo, JC ;
Armentrout, PB .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (48) :11420-11432
[2]   Influence of substituents on cation-π interactions -: 5.: Absolute binding energies of alkali metal cation-anisole complexes determined by threshold collision-induced dissociation and theoretical studies [J].
Amunugama, R ;
Rodgers, MT .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2003, 222 (1-3) :431-450
[3]   Influence of substituents on cation-π interactions.: 1.: Absolute binding energies of alkali metal cation-toluene complexes determined by threshold collision-induced dissociation and theoretical studies [J].
Amunugama, R ;
Rodgers, MT .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (22) :5529-5539
[4]   Stair motifs at protein-DNA interfaces:: Nonadditivity of H-bond, stacking, and cation-π interactions [J].
Biot, C ;
Wintjens, R ;
Rooman, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (20) :6220-6221
[5]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[6]   Interaction of DNA base pairs with various metal cations (Mg2+, Ca2+, Sr2+, Ba2+, Cu+, Ag+, Au+, Zn2+, Cd2+, and Hg2+): Nonempirical ab initio calculations on structures, energies, and nonadditivity of the interaction [J].
Burda, JV ;
Sponer, J ;
Leszczynski, J ;
Hobza, P .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (46) :9670-9677
[7]   N-methylformamide-benzene complex as a prototypical peptide N-H•••π hydrogen-bonded system:: Density functional theory and MP2 studies [J].
Cheng, JG ;
Kang, CM ;
Zhu, WL ;
Luo, XM ;
Puah, CM ;
Chen, KX ;
Shen, JH ;
Jiang, HL .
JOURNAL OF ORGANIC CHEMISTRY, 2003, 68 (19) :7490-7495
[8]   Counterion effects on the cation-π interaction between alkaline earth cations and benzene [J].
Cheng, YH ;
Liu, L ;
Fu, Y ;
Chen, R ;
Li, XS ;
Guo, QX .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (46) :11215-11220
[9]   Ionophores and receptors using cation-π interactions:: Collarenes [J].
Choi, HS ;
Suh, SB ;
Cho, SJ ;
Kim, KS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (21) :12094-12099
[10]   Structural influence of hydrophobic core residues on metal binding and specificity in carbonic anhydrase II [J].
Cox, JD ;
Hunt, JA ;
Compher, KM ;
Fierke, CA ;
Christianson, DW .
BIOCHEMISTRY, 2000, 39 (45) :13687-13694