Currently, molded helmet therapy is used to treat infants with deformational plagiocephaly. However, the indices of normal cranial shape remain unclear, and thus, the prevalence of deformational plagio-cephaly is unknown, particularly in Japan. We investigated the reference values for cranial morpho-logical characteristics in 1-month-old Japanese infants using a three-dimensional scanner, to deter-mine the prevalence of deformational plagiocephaly. One hundred fifty-three healthy infants who vis-ited three hospitals (from April 2020 to March 2021) were enrolled. Cranial shape was measured using a three-dimensional scanner and was analyzed using image analysis software. Outcome measures were cranial volume, length, width, length-width ratio, circumference, asymmetry, and vault asymmetry in-dex; cephalic index; and anterior, posterior, and overall symmetry ratios. The cranial vault asymmetry index >3.5% or >_10% were diagnosed as deformational or severe deformational plagiocephaly, respec-tively. The mean age at measurement was 35.7 days. The mean cranial volume was 559 mL; cranial length, 129 mm; cranial width, 110 mm; length-width ratio, 118%; cephalic index, 85.2%; cranial cir-cumference, 377 mm, cranial asymmetry, 6.4 mm; cranial vault asymmetry index, 5.0%; and anterior, posterior, and overall asymmetry ratios, 93.1%, 91.3%, and 96.4%, respectively. The prevalence of defor-mational and severe deformational plagiocephaly was 64.7% and 6.6%, respectively. Sex-based differ-ences were observed for cranial volume and width. The results obtained in this study can be consid-ered standard values that can facilitate the differentiation of abnormal infant cranial morphological characteristics for Japanese medical practitioners.