Ankyrin domain encoding genes from an ancient horizontal transfer are functionally integrated into Nasonia developmental gene regulatory networks

被引:9
作者
Pers, Daniel [1 ]
Lynch, Jeremy A. [1 ]
机构
[1] Univ Illinois, Dept Biol Sci, MBRB 4020,900 S Ashland Ave, Chicago, IL 60607 USA
关键词
Regulatory networks; Development; EvoDevo; Ankyrin; Chalcidoidea; Nasonia; Dorsoventral patterning; Embryo; Wolbachia; Gene duplication; Horizontal gene transfer; DUPLICATE GENES; EVOLUTION; DROSOPHILA; ALIGNMENT; REPEAT; GENOME; CANALIZATION; VITRIPENNIS; PROTEINS; GRADIENT;
D O I
10.1186/s13059-018-1526-x
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: How regulatory networks incorporate additional components and how novel genes are functionally integrated into well-established developmental processes are two important and intertwined questions whose answers have major implications for understanding the evolution of development. We recently discovered a set of lineage-restricted genes with strong and specific expression patterns along the dorsal-ventral (DV) axis of the embryo of the wasp Nasonia that may serve as a powerful system for addressing these questions. We sought to both understand the evolutionary history of these genes and to determine their functions in the Nasonia DV patterning system. Results: We have found that the novel DV genes are part of a large family of rapidly duplicating and diverging ankyrin domain-encoding genes that originated most likely by horizontal transfer from a prokaryote in a common ancestor of the wasp superfamily Chalcidoidea. We tested the function of those ankyrin-encoding genes expressed along the DV axis and found that they participate in early embryonic DV patterning. We also developed a new wasp model system (Melittobia) and found that some functional integration of ankyrin genes have been preserved for over 90 million years. Conclusions: Our results indicate that regulatory networks can incorporate novel genes that then become necessary for stable and repeatable outputs. Even a modest role in developmental networks may be enough to allow novel or duplicate genes to be maintained in the genome and become fully integrated network components.
引用
收藏
页数:20
相关论文
共 56 条
[1]   Evolution of the gene network underlying wing polyphenism in ants [J].
Abouheif, E ;
Wray, GA .
SCIENCE, 2002, 297 (5579) :249-252
[2]   T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks [J].
Alix, Boc ;
Boubacar, Diallo Alpha ;
Vladimir, Makarenkov .
NUCLEIC ACIDS RESEARCH, 2012, 40 (W1) :W573-W579
[3]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[4]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[5]   Neofunctionalization of young duplicate genes in Drosophila [J].
Assis, Raquel ;
Bachtrog, Doris .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (43) :17409-17414
[6]   Eukaryotic association module in phage WO genomes from Wolbachia [J].
Bordenstein, Sarah R. ;
Bordenstein, Seth R. .
NATURE COMMUNICATIONS, 2016, 7
[7]   HUNDREDS OF ANKYRIN-LIKE REPEATS IN FUNCTIONALLY DIVERSE PROTEINS - MOBILE MODULES THAT CROSS PHYLA HORIZONTALLY [J].
BORK, P .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1993, 17 (04) :363-374
[8]   Patterning the dorsal-ventral axis of the wasp Nasonia vitripennis [J].
Buchta, Thomas ;
Oezueak, Orhan ;
Stappert, Dominik ;
Roth, Siegfried ;
Lynch, Jeremy A. .
DEVELOPMENTAL BIOLOGY, 2013, 381 (01) :189-202
[9]   Novel genes exhibit distinct patterns of function acquisition and network integration [J].
Capra, John A. ;
Pollard, Katherine S. ;
Singh, Mona .
GENOME BIOLOGY, 2010, 11 (12)
[10]   Poxvirus Host Range Protein CP77 Contains an F-Box-Like Domain That Is Necessary To Suppress NF-κB Activation by Tumor Necrosis Factor Alpha but Is Independent of Its Host Range Function [J].
Chang, Shu-Jung ;
Hsiao, Jye-Chian ;
Sonnberg, Stephanie ;
Chiang, Cheng-Ting ;
Yang, Min-Hsiang ;
Tzou, Der-Lii ;
Mercer, Andrew A. ;
Chang, Wen .
JOURNAL OF VIROLOGY, 2009, 83 (09) :4140-4152