sCMOS Noise-Corrected Superresolution Reconstruction Algorithm for Structured Illumination Microscopy

被引:3
|
作者
Zhou, Bo [1 ]
Huang, Xiaoshuai [2 ]
Fan, Junchao [3 ]
Chen, Liangyi [1 ,4 ,5 ,6 ]
机构
[1] Peking Univ, Sch Future Technol, Inst Mol Med, State Key Lab Membrane Biol,Beijing Key Lab Cardi, Beijing 100871, Peoples R China
[2] Peking Univ, Biomed Engn Dept, Beijing 100871, Peoples R China
[3] Chongqing Univ Posts & Telecommun, Coll Comp Sci & Technol, Chongqing Key Lab Image Cognit, Chongqing 400065, Peoples R China
[4] PKU IDG McGovern Inst Brain Res, Beijing 100871, Peoples R China
[5] Beijing Acad Artificial Intelligence, Beijing 100871, Peoples R China
[6] Shenzhen Bay Lab, Shenzhen 518055, Peoples R China
基金
北京市自然科学基金; 中国国家自然科学基金;
关键词
SIM; superresolution; sCMOS camera; noise correction; STIMULATED-EMISSION; RESOLUTION LIMIT; LIVE CELLS; LOCALIZATION; NANOSCOPY; CAMERAS;
D O I
10.3390/photonics9030172
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
Structured illumination microscopy (SIM) is widely applied due to its high temporal and spatial resolution imaging ability. sCMOS cameras are often used in SIM due to their superior sensitivity, resolution, field of view, and frame rates. However, the unique single-pixel-dependent readout noise of sCMOS cameras may lead to SIM reconstruction artefacts and affect the accuracy of subsequent statistical analysis. We first established a nonuniform sCMOS noise model to address this issue, which incorporates the single-pixel-dependent offset, gain, and variance based on the SIM imaging process. The simulation indicates that the sCMOS pixel-dependent readout noise causes artefacts in the reconstructed SIM superresolution (SR) image. Thus, we propose a novel sCMOS noise-corrected SIM reconstruction algorithm derived from the imaging model, which can effectively suppress the sCMOS noise-related reconstruction artefacts and improve the signal-to-noise ratio (SNR).
引用
收藏
页数:13
相关论文
共 50 条
  • [1] Image recombination transform algorithm for superresolution structured illumination microscopy
    Zhou, Xing
    Lei, Ming
    Dan, Dan
    Yao, Baoli
    Yang, Yanlong
    Qian, Jia
    Chen, Guangde
    Bianco, Piero R.
    JOURNAL OF BIOMEDICAL OPTICS, 2016, 21 (09)
  • [2] Structured Illumination Microscopy Image Reconstruction Algorithm
    Lal, Amit
    Shan, Chunyan
    Xi, Peng
    IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS, 2016, 22 (04) : 50 - 63
  • [3] Structured Illumination Microscopy for Superresolution
    Allen, John R.
    Ross, Stephen T.
    Davidson, Michael W.
    CHEMPHYSCHEM, 2014, 15 (04) : 566 - 576
  • [4] Superresolution structured illumination microscopy reconstruction algorithms: a review
    Chen, Xin
    Zhong, Suyi
    Hou, Yiwei
    Cao, Ruijie
    Wang, Wenyi
    Li, Dong
    Dai, Qionghai
    Kim, Donghyun
    Xi, Peng
    LIGHT-SCIENCE & APPLICATIONS, 2023, 12 (01)
  • [5] Structured Illumination Microscopy of Mitochondrial in Mouse Hepatocytes with an Improved Image Reconstruction Algorithm
    Hu, Kai
    Hu, Xuejuan
    He, Ting
    Liu, Jingxin
    Liu, Shiqian
    Zhang, Jiaming
    Tan, Yadan
    Yang, Xiaokun
    Wang, Hengliang
    Liang, Yifei
    Ye, Jianze
    MICROMACHINES, 2023, 14 (03)
  • [6] Fast reconstruction algorithm for structured illumination microscopy
    Tu, Shijie
    Liu, Qiulan
    Liu, Xin
    Liu, Wenjie
    Zhang, Zhimin
    Luo, Taojin
    Kuang, Cuifang
    Liu, Xu
    Hao, Xiang
    OPTICS LETTERS, 2020, 45 (06) : 1567 - 1570
  • [7] Superresolution Multidimensional Imaging with Structured Illumination Microscopy
    Jost, Aurelie
    Heintzmann, Rainer
    ANNUAL REVIEW OF MATERIALS RESEARCH, VOL 43, 2013, 43 : 261 - 282
  • [8] Rapid reconstruction algorithm for multifocal structured illumination microscopy
    Chen, Zhiqi
    He, Haozhen
    Ai, Qi
    Liu, Penghuan
    OPTICS COMMUNICATIONS, 2023, 546
  • [9] A cascaded deep network for reconstruction of structured illumination microscopy
    Liu, Xin
    Li, Jinze
    Li, Jiaoyue
    Ali, Nauman
    Zhao, Tianyu
    An, Sha
    Zheng, Juanjuan
    Ma, Ying
    Qian, Jiaming
    Zuo, Chao
    Gao, Peng
    OPTICS AND LASER TECHNOLOGY, 2024, 170
  • [10] Reconstruction of structured illumination microscopy with an untrained neural network
    Liu, Xin
    Li, Jinze
    Fang, Xiang
    Li, Jiaoyue
    Zheng, Juanjuan
    Li, Jianlang
    Ali, Nauman
    Zuo, Chao
    Gao, Peng
    An, Sha
    OPTICS COMMUNICATIONS, 2023, 537