Chromatin remodelers as active Brownian dimers

被引:9
作者
Blossey, R. [1 ]
Schiessel, H. [2 ]
机构
[1] Univ Lille, UGSF CNRS UMR8576, F-59000 Lille, France
[2] Leiden Univ, Inst Lorentz Theoret Phys, Niels Bohrweg 2, NL-2333 CA Leiden, Netherlands
关键词
nucleosome; chromatin remodeler; helicase; active Brownian dimer; DNA; SEQUENCE;
D O I
10.1088/1751-8121/aafea0
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian duper (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics.
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页数:7
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共 34 条
  • [1] [Anonymous], 2014, BIOPHYSICS BEGINNERS, DOI [10.1201/b16269, DOI 10.1201/B16269]
  • [2] Exact solution of a Brownian inchworm model for self-propulsion
    Baule, A.
    Kumar, K. Vijay
    Ramaswamy, Sriram
    [J]. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2008,
  • [3] Blossey R., 2017, CHROMATIN STRUCTURE
  • [4] Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA
    Brandani, Giovanni B.
    Takada, Shoji
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (11)
  • [5] Chromatin Hydrodynamics
    Bruinsma, Robijn
    Grosberg, Alexander Y.
    Rabin, Yitzhak
    Zidovska, Alexandra
    [J]. BIOPHYSICAL JOURNAL, 2014, 106 (09) : 1871 - 1881
  • [6] Dramatic enhancement of optical-field-ionization collisional-excitation x-ray lasing by an optically preformed plasma waveguide
    Chou, M.-C.
    Lin, P.-H.
    Lin, C.-A.
    Lin, J.-Y.
    Wang, J.
    Chen, S.-Y.
    [J]. PHYSICAL REVIEW LETTERS, 2007, 99 (06)
  • [7] Stochastic mechano-chemical kinetics of molecular motors: A multidisciplinary enterprise from a physicist's perspective
    Chowdhury, Debashish
    [J]. PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2013, 529 (01): : 1 - 197
  • [8] The Biology of Chromatin Remodeling Complexes
    Clapier, Cedric R.
    Cairns, Bradley R.
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, 2009, 78 : 273 - 304
  • [9] ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps
    Deindl, Sebastian
    Hwang, William L.
    Hota, Swetansu K.
    Blosser, Timothy R.
    Prasad, Punit
    Bartholomew, Blaine
    Zhuang, Xiaowei
    [J]. CELL, 2013, 152 (03) : 442 - 452
  • [10] Active processes in one dimension
    Demaerel, Thibaut
    Maes, Christian
    [J]. PHYSICAL REVIEW E, 2018, 97 (03)