Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals

被引:2
|
作者
Lou, Yuqing [1 ]
Shi, Qin [2 ]
Zhang, Yanwei [1 ]
Qi, Ying [3 ]
Zhang, Wei [1 ]
Wang, Huimin [1 ]
Lu, Jun [1 ,4 ,5 ,6 ]
Han, Baohui [1 ,4 ,5 ]
Zhong, Hua [1 ,5 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Pulm Med, Shanghai, Peoples R China
[2] Shanghai Univ Tradit Chinese Med, Shuguang Hosp, Dept Oncol, Baoshan Branch, Shanghai, Peoples R China
[3] Hangzhou Normal Univ, Sch Basic Med Sci, Hangzhou, Peoples R China
[4] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Shanghai Inst Thorac Oncol, Shanghai, Peoples R China
[5] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Translat Med Res Platform Thorac Oncol, Shanghai, Peoples R China
[6] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Biobank, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
lung adenocarcinoma; multi-omics biomarker; immune; hypoxia; prognosis prediction; CANCER; METHYLATION; LUNG;
D O I
10.3389/fcell.2022.840466
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients.
引用
收藏
页数:12
相关论文
共 50 条
  • [21] Expression characteristic, immune signature, and prognosis value of EFNA family identified by multi-omics integrative analysis in pan-cancer
    Zonglin Jiao
    Xiao Feng
    Yuqing Cui
    Lei Wang
    Junqing Gan
    Yanbin Zhao
    Qingwei Meng
    BMC Cancer, 22
  • [22] A novel LUAD prognosis prediction model based on immune checkpoint-related lncRNAs
    Liu, Yang
    Yu, Mingyang
    Cheng, Xuechao
    Zhang, Xingshu
    Luo, Qian
    Liao, Sijin
    Chen, Zhongzheng
    Zheng, Jianhao
    Long, Kaijun
    Wu, Xingwei
    Qu, Wendong
    Gong, Ming
    Song, Yongxiang
    FRONTIERS IN GENETICS, 2022, 13
  • [23] Integrative multi-omics analysis unravels the host response landscape and reveals a serum protein panel for early prognosis prediction for ARDS
    Lin, Mengna
    Xu, Feixiang
    Sun, Jian
    Song, Jianfeng
    Shen, Yao
    Lu, Su
    Ding, Hailin
    Lan, Lulu
    Chen, Chen
    Ma, Wen
    Wu, Xueling
    Song, Zhenju
    Wang, Weibing
    CRITICAL CARE, 2024, 28 (01)
  • [24] Integrative analysis of multi-omics data reveals a pseudouridine-related lncRNA signature for prediction of glioma prognosis and chemoradiotherapy sensitivity
    Yang, Yanbo
    Wang, Fei
    Teng, Haiying
    Zhang, Chuanpeng
    Zhang, Yulian
    Chen, Pengyu
    Li, Quan
    Kan, Xiuji
    Chen, Zhouqing
    Wang, Zhong
    Yu, Yanbing
    COMPUTERS IN BIOLOGY AND MEDICINE, 2023, 166
  • [25] Identification of 6 gene markers for survival prediction in osteosarcoma cases based on multi-omics analysis
    Li, Runmin
    Wang, Guosheng
    Wu, ZhouJie
    Lu, HuaGuang
    Li, Gen
    Sun, Qi
    Cai, Ming
    EXPERIMENTAL BIOLOGY AND MEDICINE, 2021, 246 (13) : 1512 - 1523
  • [26] A multi-omics analysis-based model to predict the prognosis of low-grade gliomas
    Du, Zhijie
    Jiang, Yuehui
    Yang, Yueling
    Kang, Xiaoyu
    Yan, Jing
    Liu, Baorui
    Yang, Mi
    SCIENTIFIC REPORTS, 2024, 14 (01):
  • [27] Transcriptome profiling-based identification of prognostic subtypes and multi-omics signatures of glioblastoma
    Park, Junseong
    Shim, Jin-Kyoung
    Yoon, Seon-Jin
    Kim, Se Hoon
    Chang, Jong Hee
    Kang, Seok-Gu
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [28] Transcriptome profiling-based identification of prognostic subtypes and multi-omics signatures of glioblastoma
    Junseong Park
    Jin-Kyoung Shim
    Seon-Jin Yoon
    Se Hoon Kim
    Jong Hee Chang
    Seok-Gu Kang
    Scientific Reports, 9
  • [29] Integrative Analysis of Multi-Omics Data Based on Blockwise Sparse Principal Components
    Park, Mira
    Kim, Doyoen
    Moon, Kwanyoung
    Park, Taesung
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (21) : 1 - 17
  • [30] Integrative analysis unveils ECM signatures and pathways driving hepatocellular carcinoma progression: A multi-omics approach and prognostic model development
    Liu, Zhen
    Zhao, Pengfei
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (08)