Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals

被引:2
|
作者
Lou, Yuqing [1 ]
Shi, Qin [2 ]
Zhang, Yanwei [1 ]
Qi, Ying [3 ]
Zhang, Wei [1 ]
Wang, Huimin [1 ]
Lu, Jun [1 ,4 ,5 ,6 ]
Han, Baohui [1 ,4 ,5 ]
Zhong, Hua [1 ,5 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Pulm Med, Shanghai, Peoples R China
[2] Shanghai Univ Tradit Chinese Med, Shuguang Hosp, Dept Oncol, Baoshan Branch, Shanghai, Peoples R China
[3] Hangzhou Normal Univ, Sch Basic Med Sci, Hangzhou, Peoples R China
[4] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Shanghai Inst Thorac Oncol, Shanghai, Peoples R China
[5] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Translat Med Res Platform Thorac Oncol, Shanghai, Peoples R China
[6] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Biobank, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
lung adenocarcinoma; multi-omics biomarker; immune; hypoxia; prognosis prediction; CANCER; METHYLATION; LUNG;
D O I
10.3389/fcell.2022.840466
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Identification of hypoxia-related gene signatures based on multi-omics analysis in lung adenocarcinoma
    Luo, Qineng
    Li, Xing
    Meng, Zixing
    Rong, Hao
    Li, Yanguo
    Zhao, Guofang
    Zhu, Huangkai
    Cen, Lvjun
    Liao, Qi
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (02)
  • [2] A supervised Bayesian factor model for the identification of multi-omics signatures
    Gygi, Jeremy P.
    Konstorum, Anna
    Pawar, Shrikant
    Aron, Edel
    Kleinstein, Steven H.
    Guan, Leying
    BIOINFORMATICS, 2024, 40 (05)
  • [3] Integrative multi-omics analysis reveals molecular signatures of central obesity in children
    Zhao, Chengzhi
    An, Xizhou
    Xiao, Leyuan
    Chen, Jingyu
    Huang, Daochao
    Chen, Lijing
    Fang, Shenying
    Liang, Xiaohua
    PEDIATRIC RESEARCH, 2025,
  • [4] Integrative analysis of multi-omics data reveals the heterogeneity and signatures of immune therapy for small cell lung cancer
    Chen, Yabin
    Fang, Zhaoyuan
    Tang, Ying
    Jin, Yujuan
    Guo, Chenchen
    Hu, Liang
    Xu, Yang
    Ma, Xidong
    Gao, Jie
    Xie, Mei
    Zang, Xuelei
    Liu, Sanhong
    Chen, Haiquan
    Thomas, Roman K.
    Xue, Xinying
    Ji, Hongbin
    Chen, Luonan
    CLINICAL AND TRANSLATIONAL MEDICINE, 2021, 11 (12):
  • [5] Multi-Omics Profiling Identifies Risk Hypoxia-Related Signatures for Ovarian Cancer Prognosis
    Chen, Xingyu
    Lan, Hua
    He, Dong
    Xu, Runshi
    Zhang, Yao
    Cheng, Yaxin
    Chen, Haotian
    Xiao, Songshu
    Cao, Ke
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [6] Identification of potential regulatory mutations using multi-omics analysis and haplotyping of LUAD cell lines
    Sereewattanawoot, Sarun
    Suzuki, Ayako
    Seki, Masahide
    Kohno, Takashi
    Tsuchihara, Katsuya
    Suzuki, Yutaka
    CANCER SCIENCE, 2018, 109 : 687 - 687
  • [7] The Impact of Immune Microenvironment on the Prognosis of Pancreatic Ductal Adenocarcinoma Based on Multi-Omics Analysis
    Yang, Bing
    Zhou, Mingyao
    Wu, Yunzi
    Ma, Yuanyuan
    Tan, Qin
    Yuan, Wei
    Ma, Jie
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [8] Identification and Validation of Immune Infiltration Phenotypes in Laryngeal Squamous Cell Carcinoma by Integrative Multi-Omics Analysis
    Yan, Li
    Song, Xiaole
    Yang, Gang
    Zou, Lifen
    Zhu, Yi
    Wang, Xiaoshen
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [9] Integrative Analysis Identifies Multi-Omics Signatures That Drive Molecular Classification of Uveal Melanoma
    Mo, Qianxing
    Wan, Lixin
    Schell, Michael J.
    Jim, Heather
    Tworoger, Shelley S.
    Peng, Guang
    CANCERS, 2021, 13 (24)
  • [10] Prognosis prediction model for conversion from mild cognitive impairment to Alzheimer's disease created by integrative analysis of multi-omics data
    Shigemizu, Daichi
    Akiyama, Shintaro
    Higaki, Sayuri
    Sugimoto, Taiki
    Sakurai, Takashi
    Boroevich, Keith A.
    Sharma, Alok
    Tsunoda, Tatsuhiko
    Ochiya, Takahiro
    Niida, Shumpei
    Ozaki, Kouichi
    ALZHEIMERS RESEARCH & THERAPY, 2020, 12 (01)