Multi-Omics Signatures Identification for LUAD Prognosis Prediction Model Based on the Integrative Analysis of Immune and Hypoxia Signals

被引:2
作者
Lou, Yuqing [1 ]
Shi, Qin [2 ]
Zhang, Yanwei [1 ]
Qi, Ying [3 ]
Zhang, Wei [1 ]
Wang, Huimin [1 ]
Lu, Jun [1 ,4 ,5 ,6 ]
Han, Baohui [1 ,4 ,5 ]
Zhong, Hua [1 ,5 ]
机构
[1] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Pulm Med, Shanghai, Peoples R China
[2] Shanghai Univ Tradit Chinese Med, Shuguang Hosp, Dept Oncol, Baoshan Branch, Shanghai, Peoples R China
[3] Hangzhou Normal Univ, Sch Basic Med Sci, Hangzhou, Peoples R China
[4] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Shanghai Inst Thorac Oncol, Shanghai, Peoples R China
[5] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Translat Med Res Platform Thorac Oncol, Shanghai, Peoples R China
[6] Shanghai Jiao Tong Univ, Shanghai Chest Hosp, Dept Biobank, Shanghai, Peoples R China
来源
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY | 2022年 / 10卷
基金
中国国家自然科学基金;
关键词
lung adenocarcinoma; multi-omics biomarker; immune; hypoxia; prognosis prediction; CANCER; METHYLATION; LUNG;
D O I
10.3389/fcell.2022.840466
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Lung adenocarcinoma (LUAD) is the most common histological subtype of lung cancer with heterogeneous outcomes and diverse therapeutic responses. However, the understanding of the potential mechanism behind LUAD initiation and progression remains limited. Increasing evidence shows the clinical significance of the interaction between immune and hypoxia in tumor microenvironment. To mine reliable prognostic signatures related to both immune and hypoxia and provide a more comprehensive landscape of the hypoxia-immune genome map, we investigated the hypoxia-immune-related alteration at the multi-omics level (gene expression, somatic mutation, and DNA methylation). Multiple strategies including lasso regression and multivariate Cox proportional hazards regression were used to screen the signatures with clinical significance and establish an incorporated prognosis prediction model with robust discriminative power on survival status on both the training and test datasets. Finally, combing all the samples, we constructed a robust model comprising 19 signatures for the prognosis prediction of LUAD patients. The results of our study provide a comprehensive landscape of hypoxia-immune related genetic alterations and provide a robust prognosis predictor for LUAD patients.
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页数:12
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