Long-Term Room Temperature Storage of Dry Ribonucleic Acid for Use in RNA-Seq Analysis

被引:4
作者
Li, Qiyuan [1 ]
Wang, Xian [1 ]
Liu, Xiaopan [1 ]
Liao, Qiuyan [1 ]
Sun, Jianbo [1 ]
He, Xuheng [1 ]
Yang, Ting [1 ]
Yin, Jiefang [1 ]
Jia, Jia [1 ]
Li, Xue [1 ]
Colotte, Marthe [2 ]
Bonnet, Jacques [3 ,4 ]
机构
[1] BGI Shenzhen, China Natl GeneBank Shenzhen, Shenzhen, Peoples R China
[2] Imagene, Prod Platform, Rue Henri Desbrueres, Evry, France
[3] Univ Bordeaux, Inst Bergonie, Bordeaux, France
[4] Univ Bordeaux, R&D Dept, Imagene, ENSTBB, Bordeaux, France
关键词
room temperature storage; trehalose; RIN; RNA-seq; NUCLEIC-ACIDS; DNA; STABILITY; DEGRADATION;
D O I
10.1089/bio.2017.0024
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
RNA is an essential biological material for research in genomics and translational medicine. As such, its storage for biobanking is an important field of study. Traditionally, long-term storage in the cold (generally freezers or liquid nitrogen) is used to maintain high-quality (in terms of quantity and integrity) RNA. Room temperature (RT) preservation provides an alternative to the cold, which is plagued by serious problems (mainly cost and safety), for RNA long-term storage. In this study, we evaluated the performance of several RT storage procedures, including the RNAshell((R)) from Imagene, where the RNA is dried and kept protected from the atmosphere, and the vacuum drying of RNA with additives such as the Imagene stabilization solution and a home-made trehalose solution. This evaluation was performed through accelerated (equivalent to 10 years for RNAshell) aging and real-time studies (4 years). To check RNA quality and integrity, we used RNA integrity number values and RNA-seq. Our study shows that isolation from atmosphere offers a superior protective effect for RNA storage compared with vacuum drying alone, and demonstrates that RNAshell permits satisfactory RNA quality for long-term RT storage. Thus, the RNA quality could meet the demand of downstream applications such as RNA-seq.
引用
收藏
页码:502 / 511
页数:10
相关论文
共 37 条
[1]   Detecting differential usage of exons from RNA-seq data [J].
Anders, Simon ;
Reyes, Alejandro ;
Huber, Wolfgang .
GENOME RESEARCH, 2012, 22 (10) :2008-2017
[2]   Chain and conformation stability of solid-state DNA: implications for room temperature storage [J].
Bonnet, Jacques ;
Colotte, Marthe ;
Coudy, Delphine ;
Couallier, Vincent ;
Portier, Joseph ;
Morin, Benedicte ;
Tuffet, Sophie .
NUCLEIC ACIDS RESEARCH, 2010, 38 (05) :1531-1546
[3]   Heat-induced formation of reactive oxygen species and 8-oxoguanine, a biomarker of damage to DNA [J].
Bruskov, VI ;
Malakhova, LV ;
Masalimov, ZK ;
Chernikov, AV .
NUCLEIC ACIDS RESEARCH, 2002, 30 (06) :1354-1363
[4]   A novel method for room temperature distribution and conservation of RNA and DNA reference materials for guaranteeing performance of molecular diagnostics in onco-hematology: A GBMHM study [J].
Cayuela, Jean-Michel ;
Maute, Carole ;
Fabre, Anne-Lise ;
Nibourel, Olivier ;
Dulucq, Stephanie ;
Delabesse, Eric ;
Villarese, Patrick ;
Hayette, Sandrine ;
Mozziconacci, Marie-Joelle ;
Macintyre, Elizabeth .
CLINICAL BIOCHEMISTRY, 2015, 48 (15) :982-987
[5]   Chinese biobanks: present and future [J].
Cheng, Le ;
Shi, Chuan ;
Wang, Xian ;
Li, Qiyuan ;
Wan, Qian ;
Yan, Zhixiang ;
Zhang, Yong .
GENETICS RESEARCH, 2013, 95 (06) :157-164
[6]   Ribozyme speed limits [J].
Emilsson, GM ;
Nakamura, S ;
Roth, A ;
Breaker, RR .
RNA, 2003, 9 (08) :907-918
[7]  
Evans RK, 2000, J PHARM SCI, V89, P76, DOI 10.1002/(SICI)1520-6017(200001)89:1<76::AID-JPS8>3.0.CO
[8]  
2-U
[9]   An efficient method for long-term room temperature storage of RNA [J].
Fabre, Anne-Lise ;
Colotte, Marthe ;
Luis, Aurelie ;
Tuffet, Sophie ;
Bonnet, Jacques .
EUROPEAN JOURNAL OF HUMAN GENETICS, 2014, 22 (03) :379-385
[10]   Removing technical variability in RNA-seq data using conditional quantile normalization [J].
Hansen, Kasper D. ;
Irizarry, Rafael A. ;
WU, Zhijin .
BIOSTATISTICS, 2012, 13 (02) :204-216