SED-ML web tools: generate, modify and export standard-compliant simulation studies

被引:7
作者
Bergmann, Frank T. [1 ]
Nickerson, David [2 ]
Waltemath, Dagmar [3 ]
Scharm, Martin [3 ]
机构
[1] Heidelberg Univ, COS BioQUANT, Heidelberg, Germany
[2] Univ Auckland, Auckland Bioengn Inst, Auckland, New Zealand
[3] Univ Rostock, Dept Syst Biol & Bioinformat, Rostock, Germany
关键词
DESCRIPTION MARKUP LANGUAGE;
D O I
10.1093/bioinformatics/btw812
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simulation of models in SBML and CellML formats. Ultimately, the Web Tools lower the bar on working with SED-ML documents and help users create valid simulation descriptions. Availability and Implementation: http://sysbioapps.dyndns.org/SEDML_Web_Tools/. Contact: fbergman@caltech.edu.
引用
收藏
页码:1253 / 1254
页数:2
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