The Emerging Field of Quantitative Blood Metabolomics for Biomarker Discovery in Critical Illnesses

被引:142
作者
Serkova, Natalie J. [2 ,3 ,4 ]
Standiford, Theodore J. [5 ]
Stringer, Kathleen A. [1 ]
机构
[1] Univ Michigan, Coll Pharm, Dept Clin Social & Adm Sci, Ann Arbor, MI 48104 USA
[2] Univ Colorado Denver, Sch Med, Dept Anesthesiol, Aurora, CO USA
[3] Univ Colorado Denver, NMR Metabol Core, Colorado Clin Translat Sci Inst, Aurora, CO USA
[4] Univ Colorado Denver, Univ Colorado Canc Ctr, Aurora, CO USA
[5] Univ Michigan, Sch Med, Dept Internal Med, Div Pulm & Crit Care Med, Ann Arbor, MI USA
基金
美国国家卫生研究院;
关键词
sepsis; acute lung injury; pneumonia; trauma; MAGNETIC-RESONANCE-SPECTROSCOPY; ACUTE LUNG INJURY; COMPUTATIONAL ANALYSIS; PATTERN-RECOGNITION; MASS-SPECTROMETRY; POTENTIAL ROLE; SEPSIS; METABONOMICS; H-1-NMR; EXPRESSION;
D O I
10.1164/rccm.201103-0474CI
中图分类号
R4 [临床医学];
学科分类号
1002 ; 100602 ;
摘要
Metabolomics, a science of systems biology, is the global assessment of endogenous metabolites within a biologic system and represents a "snapshot" reading of gene function, enzyme activity, and the physiological landscape. Metabolite detection, either individual or grouped as a metabolomic profile, is usually performed in cells, tissues, or biofluids by either nuclear magnetic resonance spectroscopy or mass spectrometry followed by sophisticated multivariate data analysis. Because loss of metabolic homeostasis is commonin critical illness, the metabolome could have many applications, including biomarker and drug target identification. Metabolomics could also significantly advance our understanding of the complex pathophysiology of acute illnesses, such as sepsis and acute lung injury/acute respiratory distress syndrome. Despite this potential, the clinical community is largely unfamiliar with the field of metabolomics, including themethodologies involved, technical challenges, and, most importantly, clinical uses. Although there is evidence of successful preclinical applications, the clinical usefulness and application of metabolomics in critical illness is just beginning to emerge, the advancement of which hinges on linking metabolite data to known and validated clinically relevant indices. In addition, other important aspects, such as patient selection, sample collection, and processing, as well as the needed multivariate data analysis, have to be taken into consideration before this innovative approach to biomarker discovery can become a reliable tool in the intensive care unit. The purpose of this review is to begin to familiarize clinicians with the field of metabolomics and its application for biomarker discovery in critical illnesses such as sepsis.
引用
收藏
页码:647 / 655
页数:9
相关论文
共 63 条
[1]   Severity of illness and organ failure assessment in adult intensive care units [J].
Afessa, Bekele ;
Gajic, Ognjen ;
Keegan, Mark T. .
CRITICAL CARE CLINICS, 2007, 23 (03) :639-+
[2]   Critical evaluation of 1H NMR metabonomics of serum as a methodology for disease risk assessment and diagnostics [J].
Ala-Korpela, Mika .
CLINICAL CHEMISTRY AND LABORATORY MEDICINE, 2008, 46 (01) :27-42
[3]   H-1 NMR spectroscopy of human blood plasma [J].
AlaKorpela, M .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 1995, 27 :475-554
[4]   The Lingering Consequences of Sepsis A Hidden Public Health Disaster? [J].
Angus, Derek C. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2010, 304 (16) :1833-1834
[5]   Metabolomic Profiling for Identification of Novel Potential Biomarkers in Cardiovascular Diseases [J].
Barderas, Maria G. ;
Laborde, Carlos M. ;
Posada, Maria ;
de la Cuesta, Fernando ;
Zubiri, Irene ;
Vivanco, Fernando ;
Alvarez-Llamas, Gloria .
JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY, 2011,
[6]   NMR-based metabonomic approaches for evaluating physiological influences on biofluid composition [J].
Bollard, ME ;
Stanley, EG ;
Lindon, JC ;
Nicholson, JK ;
Holmes, E .
NMR IN BIOMEDICINE, 2005, 18 (03) :143-162
[7]  
Brindle JT, 2002, NAT MED, V8, P1439, DOI 10.1038/nm802
[8]   Application of chemometrics to 1H NMR spectroscopic data to investigate a relationship between human serum metabolic profiles and hypertension [J].
Brindle, JT ;
Nicholson, JK ;
Schofield, PM ;
Grainger, DJ ;
Holmes, E .
ANALYST, 2003, 128 (01) :32-36
[9]   Proteomic and computational analysis of bronchoalveolar proteins during the course of the acute respiratory distress syndrome [J].
Chang, Dong W. ;
Hayashi, Shinichi ;
Gharib, Sina A. ;
Vaisar, Tomas ;
King, S. Trevor ;
Tsuchiya, Mitsuhiro ;
Ruzinski, John T. ;
Park, David R. ;
Matute-Bello, Gustavo ;
Wurfel, Mark M. ;
Bumgarner, Roger ;
Heinecke, Jay W. ;
Martin, Thomas R. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2008, 178 (07) :701-709
[10]   NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology [J].
Coen, Muireann ;
Holmes, Elaine ;
Lindon, John C. ;
Nicholson, Jeremy K. .
CHEMICAL RESEARCH IN TOXICOLOGY, 2008, 21 (01) :9-27