Genetic risk score modifies the effect of APOE on risk and age onset of Alzheimer's disease

被引:4
作者
Shi, Zhuqing [1 ,2 ,3 ]
Yu, Hongjie [3 ]
Wu, Yishuo [3 ,4 ]
Ford, Madison [3 ]
Perschon, Chelsea [3 ]
Wang, Chihsiung [5 ]
Zheng, Siqun L. [3 ]
Xu, Jianfeng [1 ,2 ,3 ,4 ]
机构
[1] Fudan Univ, Sch Life Sci, State Key Lab Genet Engn, Shanghai, Peoples R China
[2] Fudan Univ, Sch Life Sci, Ctr Genet Epidemiol, Shanghai, Peoples R China
[3] NorthShore Univ HealthSyst, Program Personalized Canc Care, 1001 Univ Pl, Evanston, IL 60201 USA
[4] Fudan Univ, Fudan Inst Urol, Huashan Hosp, Shanghai, Peoples R China
[5] NorthShore Univ Hlth Syst, Ctr Biomed Res Informat, Evanston, IL USA
关键词
Alzheimer's disease; APOE; case-control studies; genetic risk score; single nucleotide polymorphism; HAN CHINESE; COMMON VARIANTS; PREDICTION; BREAST; LOCI; ASSOCIATION; DECLINE; CD2AP; EPHA1; CD33;
D O I
10.1111/cge.13479
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Single nucleotide polymorphism (SNP)-based genetic risk score (GRS) and APOE genotype are both important in risk prediction of Alzheimer's disease (AD); however, the interaction between GRS and APOE has not been extensively investigated. Our objective was to determine whether GRS modifies the APOE effect on AD risk and age at onset (AAO). The study included 774 AD cases and 767 controls of European descent. Population standardized GRS was calculated based on 17 previously implicated AD risk-associated SNPs. Association was analyzed using logistic regression, Cox proportional hazards model and Kaplan-Meier curve. We found that GRS was significantly associated with AD risk and the association was stronger among APOE epsilon 4 carriers. Compared to epsilon 4 non-carriers, the Odds Ratio (OR) for AD was 8.09 (95% Confidence Interval [CI]: 4.98-13.63) for epsilon 4 carriers with high-GRS (>= 1.5). In contrast, the OR was 2.55 (95% CI: 1.46-4.49) for epsilon 4 carriers with low-GRS (<0.6). In conclusion, these results suggest SNP-based GRS may supplement APOE for better assessment of inherited risk and age of onset of AD.
引用
收藏
页码:302 / 309
页数:8
相关论文
共 40 条
[1]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[2]   The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease [J].
Antunez, Carmen ;
Boada, Merce ;
Gonzalez-Perez, Antonio ;
Gayan, Javier ;
Ramirez-Lorca, Reposo ;
Marin, Juan ;
Hernandez, Isabel ;
Moreno-Rey, Concha ;
Jesus Moron, Francisco ;
Lopez-Arrieta, Jesus ;
Mauleon, Ana ;
Rosende-Roca, Maitee ;
Noguera-Perea, Fuensanta ;
Legaz-Garcia, Agustina ;
Vivancos-Moreau, Laura ;
Velasco, Juan ;
Miguel Carrasco, Jose ;
Alegret, Montserrat ;
Antequera-Torres, Martirio ;
Manzanares, Salvadora ;
Romo, Alejandro ;
Blanca, Irene ;
Ruiz, Susana ;
Espinosa, Anna ;
Castano, Sandra ;
Garcia, Blanca ;
Martinez-Herrada, Begona ;
Vinyes, Georgina ;
Lafuente, Asuncion ;
Becker, James T. ;
Jorge Galan, Jose ;
Serrano-Rios, Manuel ;
Vazquez, Enrique ;
Tarraga, Lluis ;
Eugenia Saez, Maria ;
Lopez, Oscar L. ;
Miguel Real, Luis ;
Ruiz, Agustin .
GENOME MEDICINE, 2011, 3
[3]   Reclassification of prostate cancer risk using sequentially identified SNPs: Results from the REDUCE trial [J].
Chen, Haitao ;
Na, Rong ;
Packiam, Vignesh T. ;
Conran, Carly A. ;
Jiang, Deke ;
Tao, Sha ;
Yu, Hongjie ;
Lin, Xiaoling ;
Meng, Wei ;
Zheng, S. Lilly ;
Brendler, Charles B. ;
Helfand, Brian T. ;
Xu, Jianfeng .
PROSTATE, 2017, 77 (11) :1179-1186
[4]   Population-standardized genetic risk score: the SNP-based method of choice for inherited risk assessment of prostate cancer [J].
Conran, Carly A. ;
Na, Rong ;
Chen, Haitao ;
Jiang, Deke ;
Lin, Xiaoling ;
Zheng, S. Lilly ;
Brendler, Charles B. ;
Xu, Jianfeng .
ASIAN JOURNAL OF ANDROLOGY, 2016, 18 (04) :520-524
[5]   Polygenic risk score of sporadic late-onset Alzheimer's disease reveals a shared architecture with the familial and early-onset forms [J].
Cruchaga, Carlos ;
Del-Aguila, Jorge L. ;
Saef, Benjamin ;
Black, Kathleen ;
Fernandez, Maria Victoria ;
Budde, John ;
Ibanez, Laura ;
Deming, Yuetiva ;
Kapoor, Manav ;
Tosto, Giuseppe ;
Mayeux, Richard P. ;
Holtzman, David M. ;
Fagan, Anne M. ;
Morris, John C. ;
Bateman, Randall J. ;
Goate, Alison M. ;
Harari, Oscar .
ALZHEIMERS & DEMENTIA, 2018, 14 (02) :205-214
[6]   Genetic assessment of age-associated Alzheimer disease risk: Development and validation of a polygenic hazard score [J].
Desikan, Rahul S. ;
Fan, Chun Chieh ;
Wang, Yunpeng ;
Schork, Andrew J. ;
Cabra, Howard J., I ;
Cupples, L. Adrienne ;
Thompson, Wesley K. ;
Besser, Lilah ;
Kukull, Walter A. ;
Holland, Dominic ;
Chen, Chi-Hua ;
Brewer, James B. ;
Karow, David S. ;
Kauppi, Karolina ;
Witoelar, Aree ;
Karch, Celeste M. ;
Bonham, Luke W. ;
Yokoyama, Jennifer S. ;
Rosen, Howard J. ;
Miller, Bruce L. ;
Dillon, William P. ;
Wilson, David M. ;
Hess, Christopher P. ;
Pericak-Vance, Margaret ;
Haines, Jonathan L. ;
Farrer, Lindsay A. ;
Mayeux, Richard ;
Hardy, John ;
Goate, Alison M. ;
Hyman, Bradley T. ;
Schellenberg, Gerard D. ;
McEvoy, Linda K. ;
Andreassen, Ole A. ;
Dale, Anders M. .
PLOS MEDICINE, 2017, 14 (03)
[7]   Breast Cancer Risk Prediction Using Clinical Models and 77 Independent Risk-Associated SNPs for Women Aged Under 50 Years: Australian Breast Cancer Family Registry [J].
Dite, Gillian S. ;
MacInnis, Robert J. ;
Bickerstaffe, Adrian ;
Dowty, James G. ;
Allman, Richard ;
Apicella, Carmel ;
Milne, Roger L. ;
Tsimiklis, Helen ;
Phillips, Kelly-Anne ;
Giles, Graham G. ;
Terry, Mary Beth ;
Southey, Melissa C. ;
Hopper, John L. .
CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION, 2016, 25 (02) :359-365
[8]   Power and Predictive Accuracy of Polygenic Risk Scores [J].
Dudbridge, Frank .
PLOS GENETICS, 2013, 9 (03)
[9]   Effects of age, sex, and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease - A meta-analysis [J].
Farrer, LA ;
Cupples, LA ;
Haines, JL ;
Hyman, B ;
Kukull, WA ;
Mayeux, R ;
Myers, RH ;
PericakVance, MA ;
Risch, N ;
vanDuijn, CM .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 1997, 278 (16) :1349-1356
[10]   ZCWPW1 is associated with late-onset Alzheimer's disease in Han Chinese: a replication study and meta-analyses [J].
Gao, Yu ;
Tan, Meng-Shan ;
Wang, Hui-Fu ;
Zhang, Wei ;
Wang, Zi-Xuan ;
Jiang, Teng ;
Yu, Jin-Tai ;
Tan, Lan .
ONCOTARGET, 2016, 7 (15) :20305-20311