Nocardioides daecheongensis sp nov., isolated from soil

被引:8
作者
Lim, Jun-Muk [1 ,2 ]
Kim, Soo-Jin [1 ]
Hamada, Moriyuki [3 ]
Ahn, Jae-Hyung [1 ]
Weon, Hang-Yeon [1 ]
Suzuki, Ken-ichiro [3 ]
Ahn, Tae-Young [2 ]
Kwon, Soon-Wo [1 ]
机构
[1] Natl Acad Agr Sci, Agr Microbiol Div, Rural Dev Adm, Suwon, South Korea
[2] Dankook Univ, Dept Microbiol, Cheonan 330714, South Korea
[3] Natl Inst Technol & Evaluat, NITE Biol Resource Ctr NBRC, Kisarazu, Chiba 2920818, Japan
关键词
ACID; CLASSIFICATION; RHIZOSPHERE; GENUS;
D O I
10.1099/ijs.0.063610-0
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Strain K152-16(T) was isolated from a soil sample collected from Daecheong Island of. Incheon region, South Korea. K152-16(T) was Gram-staining-positive, aerobic, non-spore-forming, nonmotile, catalase-positive, oxidase-negative and mesophilic. On the basis of 16S rRNA gene sequence analysis, strain KIS2-16(T) represented a member of the genus Nocardioides, being most closely related to the type strains of species of the genus Nocardioides, Nocardioides maradonensis RP-B30(T) (97.8% sequence similarity) and Nocardioides ultimimeridianus RP-B26(T) (97.0%). The fatty acid profile of K152-16(T) was dominated by C(18:1 omega)9c, C-17:1 omega C, C-16:0, C-18:0 10-methyl (TBSA), C-16:0 2-OH and C-17:0 2-OH. The major isoprenoid quinone was MK8(H4), and the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. The peptidoglycan structure was A3 gamma-type with LL-diaminopimelic acid. The genomic DNA G+C content of KIS2-16(T) was 64.9 molok. Strain KIS2-16(T) showed DNA DNA hybridization values of less than 70% with the closely related species of the genus Nocardioides. Based on phenotypic, genotypic and phylogenetic data, the isolate represents a novel species of the genus Nocardioides, for which the name Nocardioides daecheongensis sp. nov. (type strain KIS2-16(T)= DSM 27136(T)=KACC 17297(T)=NBRC 109597(T)) is proposed.
引用
收藏
页码:4109 / 4114
页数:6
相关论文
共 24 条
  • [1] Polyamine profiles within genera of the class Actinobacteria with LL-diaminopimelic acid in the peptidoglycan
    Busse, HJ
    Schumann, P
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1999, 49 : 179 - 184
  • [2] COLLINS MD, 1980, J GEN MICROBIOL, V118, P29
  • [3] Nocardioides ginsengisoli sp nov., isolated from soil of a ginseng field
    Cui, Ying-Shun
    Lee, Sung-Taik
    Im, Wan-Taek
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 : 3045 - 3050
  • [4] Nocardioides perillae sp nov., isolated from surface-sterilized roots of Perilla frutescens
    Du, Hui-Jing
    Wei, Yu-Zhen
    Su, Jing
    Liu, Hong-Yu
    Ma, Bai-Ping
    Guo, Bao-Lin
    Zhang, Yu-Qin
    Yu, Li-Yan
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 : 1068 - 1072
  • [5] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
  • [6] A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature
    Gonzalez, JM
    Saiz-Jimenez, C
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2002, 4 (11) : 770 - 773
  • [7] Lysinimicrobium mangrovi gen. nov., sp nov., an actinobacterium isolated from the rhizosphere of a mangrove
    Hamada, Moriyuki
    Tamura, Tomohiko
    Yamamura, Hideki
    Suzuki, Ken-ichiro
    Hayakawa, Masayuki
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 1731 - 1735
  • [8] Nocardioides humi sp nov., a β-glucosidase-producing bacterium isolated from soil of a ginseng field
    Kim, Myung Kyum
    Srinivasan, Sathiyaraj
    Park, Min-Ju
    Sathiyaraj, Gayathri
    Kim, Yeon-Ju
    Yang, Deok-Chun
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2009, 59 : 2724 - 2728
  • [9] Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
    Kim, Ok-Sun
    Cho, Yong-Joon
    Lee, Kihyun
    Yoon, Seok-Hwan
    Kim, Mincheol
    Na, Hyunsoo
    Park, Sang-Cheol
    Jeon, Yoon Seong
    Lee, Jae-Hak
    Yi, Hana
    Won, Sungho
    Chun, Jongsik
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 : 716 - 721
  • [10] QUANTITATIVE PHYLETICS AND EVOLUTION OF ANURANS
    KLUGE, AG
    FARRIS, JS
    [J]. SYSTEMATIC ZOOLOGY, 1969, 18 (01): : 1 - +