RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

被引：938

作者：

Yu, Yan ^{[1
,2
]}

Harris, Alan J. ^{[3
]}

Blair, Christopher ^{[2
,4
]}

He, Xingjin ^{[1
]}

机构：

[1] Sichuan Univ, Coll Life Sci, Key Lab Bioresources & Ecoenvironm, Minist Educ, Chengdu 610065, Sichuan, Peoples R China

[2] Duke Univ, Dept Biol, Durham, NC 27708 USA

[3] Oklahoma State Univ, Dept Bot, Stillwater, OK 74078 USA

[4] CUNY, New York City Coll Technol, Dept Biol Sci, Brooklyn, NY 11201 USA

来源：

MOLECULAR PHYLOGENETICS AND EVOLUTION | 2015年 / 87卷

基金：

中国国家自然科学基金;

关键词：

Historical biogeography; Ancestral state reconstruction; Software; DISPERSAL-VICARIANCE ANALYSIS; RANGE EVOLUTION; DIVERSIFICATION; EXTINCTION; INFERENCE; AVES;

D O I：

10.1016/j.ympev.2015.03.008

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We announce the release of Reconstruct Ancestral State in Phylogenies (RASP), a user-friendly software package for inferring historical biogeography through reconstructing ancestral geographic distributions on phylogenetic trees. RASP utilizes the widely used Statistical-Dispersal Vicariance Analysis (S-DIVA), the Dispersal-Extinction-Cladogenesis (DEC) model (Lagrange), a Statistical DEC model (S-DEC) and BayArea. It provides a graphical user interface (GUI) to specify a phylogenetic tree or set of trees and geographic distribution constraints, draws pie charts on the nodes of a phylogenetic tree to indicate levels of uncertainty, and generates high-quality exportable graphical results. RASP can run on both Windows and Mac OS X platforms. All documentation and source code for RASP is freely available at http://mnh.scu. edu.cn/soft/blog/RASP. (C) 2015 Elsevier Inc. All rights reserved.

引用

页码：46 / 49

页数：4

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