Efficient in vitro and in vivo RNA editing via recruitment of endogenous ADARs using circular guide RNAs

被引:111
作者
Katrekar, Dhruva [1 ]
Yen, James [1 ]
Xiang, Yichen [1 ]
Saha, Anushka [1 ]
Meluzzi, Dario [2 ]
Savva, Yiannis [3 ]
Mali, Prashant [1 ]
机构
[1] Univ Calif San Diego, Dept Bioengn, San Diego, CA 92103 USA
[2] Univ Calif San Diego, Dept Med, San Diego, CA 92103 USA
[3] Shape Therapeut, Seattle, WA USA
基金
美国国家卫生研究院;
关键词
DOUBLE-STRANDED-RNA; UNWINDING ACTIVITY; SEQ DATA; CELL;
D O I
10.1038/s41587-021-01171-4
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Recruiting endogenous adenosine deaminases using exogenous guide RNAs to edit cellular RNAs is a promising therapeutic strategy, but editing efficiency and durability remain low using current guide RNA designs. In this study, we engineered circular ADAR-recruiting guide RNAs (cadRNAs) to enable more efficient programmable adenosine-to-inosine RNA editing without requiring co-delivery of any exogenous proteins. Using these cadRNAs, we observed robust and durable RNA editing across multiple sites and cell lines, in both untranslated and coding regions of RNAs, and high transcriptome-wide specificity. Additionally, we increased transcript-level specificity for the target adenosine by incorporating interspersed loops in the antisense domains, reducing bystander editing. In vivo delivery of cadRNAs via adeno-associated viruses enabled 53% RNA editing of the mPCSK9 transcript in C57BL/6J mice livers and 12% UAG-to-UGG RNA correction of the amber nonsense mutation in the IDUA-W392X mouse model of mucopolysaccharidosis type I-Hurler syndrome. cadRNAs enable efficient programmable RNA editing in vivo with diverse protein modulation and gene therapeutic applications. Circular guide RNAs boost the efficiency of RNA editing with endogenous ADARs.
引用
收藏
页码:938 / +
页数:19
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