Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles
被引:15
作者:
de Souza, R. M.
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Univ Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
Univ Sao Paulo, Dept Quim, FFCLRP, Ave Bandeirantes 3900, BR-14040901 Ribeirao Preto, SP, Brazil
Univ Western Ontario, Ctr Adv Mat & Biomat Res, London, ON N6K 3K7, CanadaUniv Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
de Souza, R. M.
[1
,2
,3
]
Ratochinski, R. H.
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Univ Sao Paulo, Dept Quim, FFCLRP, Ave Bandeirantes 3900, BR-14040901 Ribeirao Preto, SP, BrazilUniv Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
Ratochinski, R. H.
[2
]
Karttunen, Mikko
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机构:
Univ Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
Univ Western Ontario, Ctr Adv Mat & Biomat Res, London, ON N6K 3K7, Canada
Univ Western Ontario, Dept Appl Math, London, ON N6A 5B7, CanadaUniv Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
Karttunen, Mikko
[1
,3
,4
]
Dias, L. G.
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Univ Sao Paulo, Dept Quim, FFCLRP, Ave Bandeirantes 3900, BR-14040901 Ribeirao Preto, SP, BrazilUniv Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
Dias, L. G.
[2
]
机构:
[1] Univ Western Ontario, Dept Chem, London, ON N6A 3K7, Canada
[2] Univ Sao Paulo, Dept Quim, FFCLRP, Ave Bandeirantes 3900, BR-14040901 Ribeirao Preto, SP, Brazil
[3] Univ Western Ontario, Ctr Adv Mat & Biomat Res, London, ON N6K 3K7, Canada
[4] Univ Western Ontario, Dept Appl Math, London, ON N6A 5B7, Canada
The ELBA coarse-grained force field was originally developed for lipids, and its water model is described as a single-site Lennard-Jones particle with electrostatics modeled by an embedded point-dipole, while other molecules in this force field have a three (or four)-to-one mapping scheme. Here, ELBA was applied to investigate the self-assembly processes of dodecyl-phosphocholine (DPC) micelle, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine/1,2-dihexaoyl-sn-glycero-3-phosphocholine (DPPC/DHPC) bicelles, and DPPC/cyclohexane/water reverse micelles through coarse-grained molecular dynamics (MD) simulations. New parameters were obtained using a simplex algorithm-based calibration procedure to determine the Lennard-Jones parameters for cyclohexane, dodecane, and cyclohexane dodecane cross-interactions. Density, self-diffusion coefficient, surface tension, and mixture excess volume were found to be in fair agreement with experimental data. These new parameters were used in the simulations, and the obtained structures were analyzed for shape, size, volume, and surface area. Except for the shape of DPC micelles, all other properties match well with available experimental data and all-atom simulations. Remarkably, in agreement with experiments the rodlike shape of the DPPC reverse micelle is well described by ELBA, while all-atom data in the literature predicts a disclike shape. To further check the consistency of the force field in reproducing the correct shapes of reverse micelles, additional simulations were performed doubling the system size. Two distinct reverse micelles were obtained both presenting the rodlike shape and correct aggregation number.
机构:
Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Abel, Stephane
Galamba, Nuno
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机构:
Univ Paris 06, PSL Res Univ, Ecole Normale Super, CNRS,Dept Chim,PASTEUR, 24 Rue Lhomond, F-75005 Paris, France
Univ Paris 06, Sorbonne Univ, ENS, CNRS,PASTEUR, F-75005 Paris, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Galamba, Nuno
Karakas, Esra
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Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, France
Univ Versailles, Univ Paris Sud, Maison Simulat, CEA,CNRS,INRIA,USR 3441, F-91191 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Karakas, Esra
Marchi, Massimo
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机构:
Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Marchi, Massimo
Thompson, Ward H.
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Univ Kansas, Dept Chem, Lawrence, KS 66045 USACommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
机构:
Commissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
CNRS UMR 8221, Saclay, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
Abel, Stephane
Dupradeau, Francois-Yves
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机构:
Univ Picardie Jules Verne, UFR Pharm, Lab Glucides, Amiens, France
Univ Picardie Jules Verne, CNRS FRE 3517, Amiens, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
Dupradeau, Francois-Yves
Marchi, Massimo
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机构:
Commissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
CNRS UMR 8221, Saclay, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
机构:
Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Abel, Stephane
Galamba, Nuno
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h-index: 0
机构:
Univ Paris 06, PSL Res Univ, Ecole Normale Super, CNRS,Dept Chim,PASTEUR, 24 Rue Lhomond, F-75005 Paris, France
Univ Paris 06, Sorbonne Univ, ENS, CNRS,PASTEUR, F-75005 Paris, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Galamba, Nuno
Karakas, Esra
论文数: 0引用数: 0
h-index: 0
机构:
Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, France
Univ Versailles, Univ Paris Sud, Maison Simulat, CEA,CNRS,INRIA,USR 3441, F-91191 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Karakas, Esra
Marchi, Massimo
论文数: 0引用数: 0
h-index: 0
机构:
Commissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
CNRS, UMR 9198, F-91191 Gif Sur Yvette, France
Univ Paris Saclay, Univ Paris Sud, CNRS, CEA,I2BC, F-91198 Gif Sur Yvette, FranceCommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
Marchi, Massimo
Thompson, Ward H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Kansas, Dept Chem, Lawrence, KS 66045 USACommissariat Energie Atom & Energies Alternat, DRF iBiTEC S SB2SM, F-91191 Gif Sur Yvette, France
机构:
Commissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
CNRS UMR 8221, Saclay, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
Abel, Stephane
Dupradeau, Francois-Yves
论文数: 0引用数: 0
h-index: 0
机构:
Univ Picardie Jules Verne, UFR Pharm, Lab Glucides, Amiens, France
Univ Picardie Jules Verne, CNRS FRE 3517, Amiens, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
Dupradeau, Francois-Yves
Marchi, Massimo
论文数: 0引用数: 0
h-index: 0
机构:
Commissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France
CNRS UMR 8221, Saclay, FranceCommissariat Energie Atom & Energies Alternat, DSV iBiTEC S SB2SM LBMS, Saclay, France