共 94 条
The functional repertoires of metazoan genomes
被引:85
作者:

Ponting, Chris P.
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机构:
Univ Oxford, MRC, Dept Physiol Anat & Genet, Funct Genom Unit, Oxford OX1 3QX, England Univ Oxford, MRC, Dept Physiol Anat & Genet, Funct Genom Unit, Oxford OX1 3QX, England
机构:
[1] Univ Oxford, MRC, Dept Physiol Anat & Genet, Funct Genom Unit, Oxford OX1 3QX, England
基金:
英国医学研究理事会;
关键词:
D O I:
10.1038/nrg2413
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
Metazoan genomes are being sequenced at an increasingly rapid rate. For each new genome, the number of protein-coding genes it encodes and the amount of functional DNA it contains are known only inaccurately. Nevertheless, there have been considerable recent advances in identifying protein-coding and non-coding sequences that have remained constrained in diverse species. However, these approaches struggle to pinpoint genomic sequences that are functional in some species but that are absent or not functional in others. Yet it is here, encoded in lineage-specific and functional sequence, that we expect physiological differences between species to be most concentrated.
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页码:689 / 698
页数:10
相关论文
共 94 条
[1]
Substantial regional variation in substitution rates in the human genome: Importance of GC content, gene density, and telomere-specific effects
[J].
Arndt, PF
;
Hwa, T
;
Petrov, DA
.
JOURNAL OF MOLECULAR EVOLUTION,
2005, 60 (06)
:748-U28

Arndt, PF
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Mol Genet, D-14195 Berlin, Germany

Hwa, T
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Mol Genet, D-14195 Berlin, Germany

Petrov, DA
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Mol Genet, D-14195 Berlin, Germany
[2]
Conservation of a vitellogenin gene cluster in oviparous vertebrates and identification of its traces in the platypus genome
[J].
Babin, Patrick J.
.
GENE,
2008, 413 (1-2)
:76-82

Babin, Patrick J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bordeaux 1, UMR NuAGe, F-33405 Talence, France Univ Bordeaux 1, UMR NuAGe, F-33405 Talence, France
[3]
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
[J].
Birney, Ewan
;
Stamatoyannopoulos, John A.
;
Dutta, Anindya
;
Guigo, Roderic
;
Gingeras, Thomas R.
;
Margulies, Elliott H.
;
Weng, Zhiping
;
Snyder, Michael
;
Dermitzakis, Emmanouil T.
;
Stamatoyannopoulos, John A.
;
Thurman, Robert E.
;
Kuehn, Michael S.
;
Taylor, Christopher M.
;
Neph, Shane
;
Koch, Christoph M.
;
Asthana, Saurabh
;
Malhotra, Ankit
;
Adzhubei, Ivan
;
Greenbaum, Jason A.
;
Andrews, Robert M.
;
Flicek, Paul
;
Boyle, Patrick J.
;
Cao, Hua
;
Carter, Nigel P.
;
Clelland, Gayle K.
;
Davis, Sean
;
Day, Nathan
;
Dhami, Pawandeep
;
Dillon, Shane C.
;
Dorschner, Michael O.
;
Fiegler, Heike
;
Giresi, Paul G.
;
Goldy, Jeff
;
Hawrylycz, Michael
;
Haydock, Andrew
;
Humbert, Richard
;
James, Keith D.
;
Johnson, Brett E.
;
Johnson, Ericka M.
;
Frum, Tristan T.
;
Rosenzweig, Elizabeth R.
;
Karnani, Neerja
;
Lee, Kirsten
;
Lefebvre, Gregory C.
;
Navas, Patrick A.
;
Neri, Fidencio
;
Parker, Stephen C. J.
;
Sabo, Peter J.
;
Sandstrom, Richard
;
Shafer, Anthony
.
NATURE,
2007, 447 (7146)
:799-816

Birney, Ewan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dutta, Anindya
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Guigo, Roderic
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Gingeras, Thomas R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Margulies, Elliott H.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Weng, Zhiping
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Snyder, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dermitzakis, Emmanouil T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Thurman, Robert E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Kuehn, Michael S.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Taylor, Christopher M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neph, Shane
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Koch, Christoph M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Asthana, Saurabh
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Malhotra, Ankit
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Adzhubei, Ivan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Greenbaum, Jason A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Andrews, Robert M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Flicek, Paul
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Boyle, Patrick J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Cao, Hua
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Carter, Nigel P.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Clelland, Gayle K.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Davis, Sean
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Day, Nathan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dhami, Pawandeep
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dillon, Shane C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dorschner, Michael O.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Fiegler, Heike
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Giresi, Paul G.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Goldy, Jeff
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Hawrylycz, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Haydock, Andrew
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Humbert, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

James, Keith D.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Brett E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Ericka M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Frum, Tristan T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Rosenzweig, Elizabeth R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Karnani, Neerja
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lee, Kirsten
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lefebvre, Gregory C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Navas, Patrick A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neri, Fidencio
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Parker, Stephen C. J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sabo, Peter J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sandstrom, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Shafer, Anthony
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
[4]
Duplication and positive selection among hominin-specific PRAME genes
[J].
Birtle Z.
;
Goodstadt L.
;
Ponting C.
.
BMC Genomics,
6 (1)

Birtle Z.
论文数: 0 引用数: 0
h-index: 0
机构:
MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road

Goodstadt L.
论文数: 0 引用数: 0
h-index: 0
机构:
MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road

Ponting C.
论文数: 0 引用数: 0
h-index: 0
机构:
MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, Oxford OX1 3QX, South Parks Road
[5]
A global analysis of Caenorhabditis elegans operons
[J].
Blumenthal, T
;
Evans, D
;
Link, CD
;
Guffanti, A
;
Lawson, D
;
Thierry-Mieg, J
;
Thierry-Mieg, D
;
Chiu, WL
;
Duke, K
;
Kiraly, M
;
Kim, SK
.
NATURE,
2002, 417 (6891)
:851-854

Blumenthal, T
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Evans, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Link, CD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Guffanti, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Lawson, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Thierry-Mieg, J
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Thierry-Mieg, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Chiu, WL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Duke, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Kiraly, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA

Kim, SK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Colorado, Sch Med, Dept Biochem & Mol Genet, Denver, CO 80262 USA
[6]
Transposable elements as drivers of genomic and biological diversity in vertebrates
[J].
Boehne, Astrid
;
Brunet, Frederic
;
Galiana-Arnoux, Delphine
;
Schultheis, Christina
;
Volff, Jean-Nicolas
.
CHROMOSOME RESEARCH,
2008, 16 (01)
:203-215

Boehne, Astrid
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France

Brunet, Frederic
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France

Galiana-Arnoux, Delphine
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France

Schultheis, Christina
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France

Volff, Jean-Nicolas
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France Univ Lyon 1, Univ Lyon, Ecole Normale Super Lyon,CNRS,INRA, Inst Genom Fonct Lyon,Inst Fed Biosci Gerland Lyo, F-69622 Villeurbanne, France
[7]
A comparative genomic analysis of two distant diptera, the fruit fly, Drosophila melanogaster, and the malaria mosquito, Anopheles gambiae
[J].
Bolshakov, VN
;
Topalis, P
;
Blass, C
;
Kokoza, E
;
della Torre, A
;
Kafatos, FC
;
Louis, C
.
GENOME RESEARCH,
2002, 12 (01)
:57-66

Bolshakov, VN
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

Topalis, P
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

Blass, C
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

Kokoza, E
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

della Torre, A
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

Kafatos, FC
论文数: 0 引用数: 0
h-index: 0
机构: FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece

Louis, C
论文数: 0 引用数: 0
h-index: 0
机构:
FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece FORTH, Inst Mol Biol & Biotechnol, Genome Res Lab, Iraklion 71110, Crete, Greece
[8]
Loss of egg yolk genes in mammals and the origin of lactation and placentation
[J].
Brawand, David
;
Wahli, Walter
;
Kaessmann, Henrik
.
PLOS BIOLOGY,
2008, 6 (03)
:507-517

Brawand, David
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland

Wahli, Walter
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland
Univ Lausanne, Natl Res Ctr Frontiers Genet, Lausanne, Switzerland Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland

Kaessmann, Henrik
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland Univ Lausanne, Ctr Integrat Genom, Lausanne, Switzerland
[9]
Steady progress and recent breakthroughs in the accuracy of automated genome annotation
[J].
Brent, Michael R.
.
NATURE REVIEWS GENETICS,
2008, 9 (01)
:62-73

Brent, Michael R.
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Ctr Genome Sci, St Louis, MO 63108 USA Washington Univ, Ctr Genome Sci, St Louis, MO 63108 USA
[10]
No effect of recombination on the efficacy of natural selection in primates
[J].
Bullaughey, Kevin
;
Przeworski, Molly
;
Coop, Graham
.
GENOME RESEARCH,
2008, 18 (04)
:544-554

Bullaughey, Kevin
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA

Przeworski, Molly
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA

Coop, Graham
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA Univ Chicago, Dept Ecol & Evolut, Chicago, IL 60637 USA