Sequencing technologies and genome sequencing

被引:457
作者
Pareek, Chandra Shekhar [1 ]
Smoczynski, Rafal [1 ]
Tretyn, Andrzej [2 ]
机构
[1] Nicolaus Copernicus Univ, Lab Funct Genom, Inst Gen & Mol Biol, Fac Biol & Earth Sci, PL-87100 Torun, Poland
[2] Nicolaus Copernicus Univ, Dept Plant Physiol & Biotechnol, Fac Biol & Earth Sci, PL-87100 Torun, Poland
关键词
CHIP-chip; Chip-seq; De novo assembling; High-throughput next generation sequencing; Personal genomics; Re-sequencing; RNA-seq; QUANTITATIVE TRAIT LOCI; NEXT-GENERATION; SINGLE-MOLECULE; WHOLE-GENOME; DNA METHYLATION; SNP DISCOVERY; REDUCED REPRESENTATION; IDENTIFICATION; ANNOTATION; MUTATIONS;
D O I
10.1007/s13353-011-0057-x
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The high-throughput - next generation sequencing (HT-NGS) technologies are currently the hottest topic in the field of human and animals genomics researches, which can produce over 100 times more data compared to the most sophisticated capillary sequencers based on the Sanger method. With the ongoing developments of high throughput sequencing machines and advancement of modern bioinformatics tools at unprecedented pace, the target goal of sequencing individual genomes of living organism at a cost of $1,000 each is seemed to be realistically feasible in the near future. In the relatively short time frame since 2005, the HT-NGS technologies are revolutionizing the human and animal genome researches by analysis of chromatin immunoprecipitation coupled to DNA microarray (ChIP-chip) or sequencing (ChIP-seq), RNA sequencing (RNA-seq), whole genome genotyping, genome wide structural variation, de novo assembling and re-assembling of genome, mutation detection and carrier screening, detection of inherited disorders and complex human diseases, DNA library preparation, paired ends and genomic captures, sequencing of mitochondrial genome and personal genomics. In this review, we addressed the important features of HT-NGS like, first generation DNA sequencers, birth of HT-NGS, second generation HT-NGS platforms, third generation HT-NGS platforms: including single molecule Heliscope (TM), SMRT (TM) and RNAP sequencers, Nanopore, Archon Genomics X PRIZE foundation, comparison of second and third HT-NGS platforms, applications, advances and future perspectives of sequencing technologies on human and animal genome research.
引用
收藏
页码:413 / 435
页数:23
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