Complete chloroplast genome sequence ofMichelia champacavar. champacaLinnaeus, an ornamental tree species of Magnoliaceae

被引：7

作者：

Chen, Shaoyu ^{[1
]}

Wu, Tao ^{[1
]}

Fu, Yupin ^{[1
]}

Hao, Jiabo ^{[1
]}

Ma, Huifen ^{[1
]}

Zhu, Yunfeng ^{[1
]}

Sima, Yongkang ^{[1
]}

机构：

[1] Yunnan Acad Forestry & Grassland Sci, Kunming 650201, Yunnan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期

基金：

中国国家自然科学基金;

关键词：

Magnoliaceae; Michelia champacavar; champacaLinnaeus; complete chloroplast genome; phylogenetic analysis;

D O I：

10.1080/23802359.2020.1790314

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Michelia champacavar. champacais an ornamentally important tree in Magnoliaceae. The paper reported the complete chloroplast genome (cpDNA) ofM. champacavar. champacaand its basic annotated information. The size of cpDNA is 160,008 bp, with a typical quadripartite structure of a large single-copy (LSC) region of 88,037 bp and a small single-copy (SSC) region of 18,809 bp separated by a pair identical inverted repeat regions (IRs) of 26,581 bp each. The genome contained 131 genes (113 unique), including 86 protein-coding genes (80 unique), 37 tRNA genes (29 unique), and eight rRNA genes (four unique). Phylogenetic analysis showed thatM. champacavar. champacais affinal toM. bailloniiand they form a nomophyletic group with other eightMicheliaspecies. ThisMicheliaclade is sister to theAromadendron cathcartiiclade with high support. All genera mentioned in this analysis are nomophyletic under the system of Magnoliaceae by Sima and Lu.

引用

页码：2845 / 2847

页数：3

共 14 条

[1] NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].

Dierckxsens, Nicolas ;

Mardulyn, Patrick ;

Smits, Guillaume .

NUCLEIC ACIDS RESEARCH, 2017, 45 (04)

[2]

[蒋冬月 Jiang Dongyue], 2013, [中国农学通报, Chinese Agricultural Science Bulletin], V29, P125

[3]

Jiang DongYue Jiang DongYue, 2012, Journal of Northeast Forestry University, V40, P71

[4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[5] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].

Kearse, Matthew ;

Moir, Richard ;

Wilson, Amy ;

Stones-Havas, Steven ;

Cheung, Matthew ;

Sturrock, Shane ;

Buxton, Simon ;

Cooper, Alex ;

Markowitz, Sidney ;

Duran, Chris ;

Thierer, Tobias ;

Ashton, Bruce ;

Meintjes, Peter ;

Drummond, Alexei .

BIOINFORMATICS, 2012, 28 (12) :1647-1649

[6] Antimicrobial activity of Michelia champaca [J].

Khan, MR ;

Kihara, M ;

Omoloso, AD .

FITOTERAPIA, 2002, 73 (7-8) :744-748

[7]

Kundu Subir Ranjan, 2009, Thaiszia, V19, P47

[8] CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences [J].

Liu, Chang ;

Shi, Linchun ;

Zhu, Yingjie ;

Chen, Haimei ;

Zhang, Jianhui ;

Lin, Xiaohan ;

Guan, Xiaojun .

BMC GENOMICS, 2012, 13

[9]

[马惠芬 Ma Huifen], 2012, [精细化工, Fine Chemicals], V29, P41

[10]

Nooteboom H. P., 2009, Thai Forest Bulletin (Botany), P111

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