FACS-assisted CRISPR-Cas9 genome editing of human induced pluripotent stem cells

被引:10
作者
Caillaud, Amandine [1 ]
Leveque, Antoine [1 ]
Thedrez, Aurelie [1 ]
Girardeau, Aurore [1 ]
Canac, Robin [1 ]
Bray, Lise [1 ]
Baudic, Manon [1 ]
Barc, Julien [1 ]
Gaborit, Nathalie [1 ]
Lamirault, Guillaume [1 ]
Gardie, Betty [1 ]
Idriss, Salam [1 ]
Rimbert, Antoine [1 ]
May, Cedric Le [1 ]
Cariou, Bertrand [1 ,2 ]
Si-Tayeb, Karim [1 ]
机构
[1] Nantes Univ, CHU Nantes, INSERM, CNRS,Inst Thorax, F-44000 Nantes, France
[2] Univ Paris Sci & Lettres, Ecole Prat Hautes Etud, EPHE, Paris, France
来源
STAR PROTOCOLS | 2022年 / 3卷 / 04期
关键词
DELIVERY; PRECISE; FEEDER;
D O I
10.1016/j.xpro.2022.101680
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
This manuscript proposes an efficient and reproducible protocol for the gener-ation of genetically modified human induced pluripotent stem cells (hiPSCs) by genome editing using CRISPR-Cas9 technology. Here, we describe the experi-mental strategy for generating knockout (KO) and knockin (KI) clonal popula-tions of hiPSCs using single-cell sorting by flow cytometry. We efficiently achieved up to 15 kb deletions, molecular tag insertions, and single-nucleotide editing in hiPSCs. We emphasize the efficacy of this approach in terms of cell culture time. For complete details on the use and execution of this protocol, please refer to Canac et al. (2022) and Bray et al. (2022).
引用
收藏
页数:19
相关论文
共 38 条
[1]   Generation of a GPR146 knockout human induced pluripotent stem cell line (ITXi001-A-1) [J].
Bray, Lise ;
Caillaud, Amandine ;
Girardeau, Aurore ;
Patitucci, Murielle ;
Le May, Cedric ;
Cariou, Bertrand ;
Rimbert, Antoine .
STEM CELL RESEARCH, 2022, 60
[2]   Easy quantitative assessment of genome editing by sequence trace decomposition [J].
Brinkman, Eva K. ;
Chen, Tao ;
Amendola, Mario ;
van Steensel, Bas .
NUCLEIC ACIDS RESEARCH, 2014, 42 (22)
[3]  
Byrne S. M., 2015, Curr. Protoc. Stem Cell Biol., V35, DOI [10.1002/9780470151808.sc05a08-35, DOI 10.1002/9780470151808.SC05A08-35]
[4]   Generation of three human induced pluripotent stem cell lines with IRX5 knockout and knockin genetic editions using CRISPR-Cas9 system [J].
Canac, Robin ;
Caillaud, Amandine ;
Cimarosti, Bastien ;
Girardeau, Aurore ;
Hamamy, Hanan ;
Reversade, Bruno ;
Bonnard, Carine ;
Al Sayed, Zeina R. ;
David, Laurent ;
Poschmann, Jeremie ;
Lemarchand, Patricia ;
Lamirault, Guillaume ;
Gaborit, Nathalie .
STEM CELL RESEARCH, 2022, 58
[5]   Transfecting and Nucleofecting Human Induced Pluripotent Stem Cells [J].
Chatterjee, Papri ;
Cheung, Yuri ;
Liew, Chee .
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2011, (56)
[6]   Inference of CRISPR Edits from Sanger Trace Data [J].
Conant, David ;
Hsiau, Tim ;
Rossi, Nicholas ;
Oki, Jennifer ;
Maures, Travis ;
Waite, Kelsey ;
Yang, Joyce ;
Joshi, Sahil ;
Kelso, Reed ;
Holden, Kevin ;
Enzmann, Brittany L. ;
Stoner, Rich .
CRISPR JOURNAL, 2022, 5 (01) :123-130
[7]   The homeodomain transcription factor lrx5 establishes the mouse cardiac ventricular repolarization gradient [J].
Costantini, DL ;
Arruda, EP ;
Agarwal, P ;
Kim, KH ;
Zhu, YH ;
Zhu, W ;
Lebel, M ;
Cheng, CW ;
Park, CY ;
Pierce, SA ;
Guerchicoff, A ;
Pollevick, GD ;
Chan, TY ;
Kabir, MG ;
Cheng, SH ;
Husain, M ;
Antzelevitch, C ;
Srivastava, D ;
Gross, GJ ;
Hui, CC ;
Backx, PH ;
Bruneau, BG .
CELL, 2005, 123 (02) :347-358
[8]   Current Challenges of iPSC-Based Disease Modeling and Therapeutic Implications [J].
Doss, Michael Xavier ;
Sachinidis, Agapios .
CELLS, 2019, 8 (05)
[9]   Low O2 tensions and the prevention of differentiation of hES cells [J].
Ezashi, T ;
Das, P ;
Roberts, RM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (13) :4783-4788
[10]   Environmental Oxygen Tension Regulates the Energy Metabolism and Self-Renewal of Human Embryonic Stem Cells [J].
Forristal, Catherine E. ;
Christensen, David R. ;
Chinnery, Fay E. ;
Petruzzelli, Raffaella ;
Parry, Kate L. ;
Sanchez-Elsner, Tilman ;
Houghton, Franchesca D. .
PLOS ONE, 2013, 8 (05)