Experimental methods and modeling techniques for description of cell population heterogeneity

被引:90
作者
Fernandes, R. Lencastre [1 ]
Nierychlo, M. [2 ]
Lundin, L. [3 ]
Pedersen, A. E. [4 ]
Tellez, P. E. Puentes [5 ]
Dutta, A. [6 ]
Carlquist, M. [7 ]
Bolic, A. [1 ]
Schapper, D. [1 ]
Brunetti, A. C. [8 ]
Helmark, S. [9 ]
Heins, A. -L [7 ]
Jensen, A. D. [10 ]
Nopens, I. [6 ]
Rottwitt, K. [8 ]
Szita, N. [11 ]
van Elsas, J. D. [5 ]
Nielsen, P. H. [2 ]
Martinussen, J. [4 ]
Sorensen, S. J. [3 ]
Lantz, A. E. [7 ]
Gernaey, K. V. [1 ]
机构
[1] Tech Univ Denmark, Ctr Proc Engn & Technol, Dept Chem & Biochem Engn, DK-2800 Lyngby, Denmark
[2] Aalborg Univ, Dept Biotechnol Chem & Environm Engn, DK-9000 Aalborg, Denmark
[3] Univ Copenhagen, Dept Biol, Mol Microbial Ecol Grp, DK-1307 Copenhagen K, Denmark
[4] Tech Univ Denmark, Dept Syst Biol, Ctr Syst Microbiol, DK-2800 Lyngby, Denmark
[5] Univ Groningen, Ctr Biol, Dept Microbial Ecol, Ctr Ecol & Evolutionary Studies, NL-9750 AA Haren, Netherlands
[6] Univ Ghent, BIOMATH, Dept Appl Math Biometr & Proc Control, B-9000 Ghent, Belgium
[7] Tech Univ Denmark, Dept Syst Biol, Ctr Microbial Technol, DK-2800 Lyngby, Denmark
[8] Tech Univ Denmark, Dept Photon Engn, DK-2800 Lyngby, Denmark
[9] Tech Univ Denmark, Fermenco ApS, DK-2800 Lyngby, Denmark
[10] Tech Univ Denmark, Ctr Combust & Harmful Emiss Control, Dept Chem & Biochem Engn, DK-2800 Lyngby, Denmark
[11] UCL, Adv Ctr Biochem Engn, Dept Biochem Engn, London WC1E 7JE, England
基金
英国生物技术与生命科学研究理事会;
关键词
Cell heterogeneity; Reporter systems; Flow cytometry; Microscopy; Raman spectroscopy; Microbioreactors; Population balance models; Computational fluid dynamics; GREEN-FLUORESCENT PROTEIN; IN-SITU HYBRIDIZATION; COMPUTATIONAL FLUID-DYNAMICS; TETRAZOLIUM CHLORIDE REDUCTION; TRANSIENT MICROBIAL PROCESSES; DIFFERENTIAL GENE-EXPRESSION; FLOW-CYTOMETRIC TECHNIQUES; FED-BATCH FERMENTATIONS; PROBE-DEFINED BACTERIA; ESCHERICHIA-COLI;
D O I
10.1016/j.biotechadv.2011.03.007
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
With the continuous development, in the last decades, of analytical techniques providing complex information at single cell level, the study of cell heterogeneity has been the focus of several research projects within analytical biotechnology. Nonetheless, the complex interplay between environmental changes and cellular responses is yet not fully understood, and the integration of this new knowledge into the strategies for design, operation and control of bioprocesses is far from being an established reality. Indeed, the impact of cell heterogeneity on productivity of large scale cultivations is acknowledged but seldom accounted for. In order to include population heterogeneity mechanisms in the development of novel bioprocess control strategies, a reliable mathematical description of such phenomena has to be developed. With this review, we search to summarize the potential of currently available methods for monitoring cell population heterogeneity as well as model frameworks suitable for describing dynamic heterogeneous cell populations. We will furthermore underline the highly important coordination between experimental and modeling efforts necessary to attain a reliable quantitative description of cell heterogeneity, which is a necessity if such models are to contribute to the development of improved control of bioprocesses. (C) 2011 Elsevier Inc. All rights reserved.
引用
收藏
页码:575 / 599
页数:25
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