Collagen triple-helix formation in all-trans chains proceeds by a nucleation/growth mechanism with a purely entropic barrier

被引:45
作者
Bachmann, A
Kiefhaber, T
Boudko, S
Engel, J
Bächinger, HP
机构
[1] Univ Basel, Bioctr, Dept Biophys Chem, CH-4056 Basel, Switzerland
[2] Oregon Hlth & Sci Univ, Dept Biochem & Mol Biol, Shriners Hosp Children, Res Ctr, Portland, OR 97239 USA
关键词
collagen folding; nucleation mechanism; double jump; activation energy;
D O I
10.1073/pnas.0505141102
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Collagen consists of repetitive Gly-Xaa-Yaa tripepticle units with proline and hydroxyproline frequently found in the Xaa and Yaa position, respectively. This sequence motif allows the formation of a highly regular triple helix that is stabilized by steric (entropic) restrictions in the constituent polyproline-II-helices and backbone hydrogen bonds between the three strands. Concentration-dependent association reactions and slow prolyl isomerization steps have been identified as major rate-limiting processes during collagen folding. To gain information on the dynamics of triple-helix formation in the absence of these slow reactions, we performed stopped-flow double-jump experiments on cross-linked fragments derived from human type III collagen. This technique allowed us to measure concentration-independent folding kinetics starting from unfolded chains with all pepticle bonds in the trans conformation. The results show that triple-helix formation occurs with a rate constant of 113 +/- 20 s(-1) at 3.7 degrees C and is virtually independent of temperature, indicating a purely entropic barrier. Comparison of the effect of guaniclinium chloride on folding kinetics and stability reveals that the rate-limiting step is represented by bringing 10 consecutive tripepticle units (3.3 per strand) into a triple-helical conformation. The following addition of tripepticle units occurs on a much faster time scale and cannot be observed experimentally. These results support an entropy-controlled zipper-like nucleation/growth mechanism for collagen triple-helix formation.
引用
收藏
页码:13897 / 13902
页数:6
相关论文
共 46 条
  • [1] BACHINGER HP, 1987, J BIOL CHEM, V262, P17144
  • [2] FOLDING MECHANISM OF THE TRIPLE HELIX IN TYPE-III COLAGEN AND TYPE-III PN-COLLAGEN - ROLE OF DISULFIDE BRIDGES AND PEPTIDE-BOND ISOMERIZATION
    BACHINGER, HP
    BRUCKNER, P
    TIMPL, R
    PROCKOP, DJ
    ENGEL, J
    [J]. EUROPEAN JOURNAL OF BIOCHEMISTRY, 1980, 106 (02): : 619 - 632
  • [3] ROLE OF CIS-TRANS ISOMERIZATION OF PEPTIDE-BONDS IN COIL REVERSIBLE TRIPLE HELIX CONVERSION OF COLLAGEN
    BACHINGER, HP
    BRUCKNER, P
    TIMPL, R
    ENGEL, J
    [J]. EUROPEAN JOURNAL OF BIOCHEMISTRY, 1978, 90 (03): : 605 - 613
  • [4] BACHINGER HP, 2005, HDB PROTEIN FOLDING, V2, P1059
  • [5] Baldwin RL, 2005, PROTEIN FOLDING HANDBOOK, P127
  • [6] Baum Jean, 1999, Current Opinion in Structural Biology, V9, P122, DOI 10.1016/S0959-440X(99)80016-5
  • [7] CRYSTAL-STRUCTURE AND MOLECULAR-STRUCTURE OF A COLLAGEN-LIKE PEPTIDE AT 1.9-ANGSTROM RESOLUTION
    BELLA, J
    EATON, M
    BRODSKY, B
    BERMAN, HM
    [J]. SCIENCE, 1994, 266 (5182) : 75 - 81
  • [8] Nucleation and propagation of the collagen triple helix in single-chain and trimerized peptides:: Transition from third to first order kinetics
    Boudko, S
    Frank, S
    Kammerer, RA
    Stetefeld, J
    Schulthess, T
    Landwehr, R
    Lustig, A
    Bächinger, HP
    Engel, J
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2002, 317 (03) : 459 - 470
  • [9] Structure formation in the C terminus of type III collagen guides disulfide cross-linking
    Boudko, SP
    Engel, J
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2004, 335 (05) : 1289 - 1297
  • [10] CONSIDERATION OF POSSIBILITY THAT SLOW STEP IN PROTEIN DENATURATION REACTIONS IS DUE TO CIS-TRANS ISOMERISM OF PROLINE RESIDUES
    BRANDTS, JF
    HALVORSON, HR
    BRENNAN, M
    [J]. BIOCHEMISTRY, 1975, 14 (22) : 4953 - 4963