3D MRI image super-resolution for brain combining rigid and large diffeomorphic registration

被引:9
作者
Liang, Zifei [1 ,2 ]
He, Xiaohai [1 ]
Teng, Qizhi [1 ]
Wu, Dan [3 ]
Qing, Lingbo [1 ]
机构
[1] Sichuan Univ, Coll Elect & Informat Engn, 29 JiuyanqiaoWangjiang Rd, Chengdu 610064, Sichuan, Peoples R China
[2] NYU, Dept Radiol, 660 1st Ave, New York, NY 10016 USA
[3] Johns Hopkins Univ, Dept Biomed Engn, Sch Med, 720 Rutland Ave, Baltimore, MD 21205 USA
基金
中国国家自然科学基金;
关键词
biomedical MRI; medical image processing; image registration; image resolution; brain; diseases; 3D MRI image super-resolution; rigid registration; large diffeomorphic registration; magnetic resonance imaging super-resolution techniques; unpredicted deformation; brain neuropathy; Alzheimer; complex structure; cerebral cortex; MULTIFRAME SUPERRESOLUTION; RESOLUTION; RECONSTRUCTION; NOISE; ANTS;
D O I
10.1049/iet-ipr.2017.0517
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Most of the recent leading multiple magnetic resonance imaging (MRI) super-resolution techniques for brain are limited to rigid motion. In this study, the authors aim to develop a super-resolution technique with diffeomorphism mainly for longitudinal brain MRI data. For the images from different time slots, unpredicted deformation may occur. In previous studies, sole rigid registration or traditional non-rigid registration has been frequently used to achieve multi-plane super-resolution. However, non-rigid motion of two brains from different time slots is difficult to model, since brain contains a wealth of complex structure such as the cerebral cortex. In order to address such problem, rigid and large diffeomorphic registration has been embedded into their super-resolution framework. In addition, many previous researchers use L2 norm to achieve superresolution framework. In this work, L1 norm minimisation and regularisation based on a bilateral prior are adopted. These operations ensure its robustness to the assumed model of data and noise. Their approach is evaluated using Alzheimer datasets from seven different resolutions. Results show that their reconstructions have advantages over rigid and conventional non-rigid registration-based super-resolution, in terms of the root-mean-square error and structure similarity. Furthermore, their reconstruction results improve the precision of brain automatic segmentation.
引用
收藏
页码:1291 / 1301
页数:11
相关论文
共 56 条
[1]  
[Anonymous], J ELECT COMPUT ENG
[2]   A fast diffeomorphic image registration algorithm [J].
Ashburner, John .
NEUROIMAGE, 2007, 38 (01) :95-113
[3]   Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain [J].
Avants, B. B. ;
Epstein, C. L. ;
Grossman, M. ;
Gee, J. C. .
MEDICAL IMAGE ANALYSIS, 2008, 12 (01) :26-41
[4]   A reproducible evaluation of ANTs similarity metric performance in brain image registration [J].
Avants, Brian B. ;
Tustison, Nicholas J. ;
Song, Gang ;
Cook, Philip A. ;
Klein, Arno ;
Gee, James C. .
NEUROIMAGE, 2011, 54 (03) :2033-2044
[5]   Landmark matching on brain surfaces via large deformation diffeomorphisms on the sphere [J].
Bakircioglu, MM ;
Joshi, S ;
Miller, MI .
MEDICAL IMAGING 1999: IMAGE PROCESSING, PTS 1 AND 2, 1999, 3661 :710-715
[6]   Computing large deformation metric mappings via geodesic flows of diffeomorphisms [J].
Beg, MF ;
Miller, MI ;
Trouvé, A ;
Younes, L .
INTERNATIONAL JOURNAL OF COMPUTER VISION, 2005, 61 (02) :139-157
[7]   Resolution enhancement in MRI [J].
Carmi, E ;
Liu, SY ;
Alon, N ;
Fiat, A ;
Fiat, D .
MAGNETIC RESONANCE IMAGING, 2006, 24 (02) :133-154
[8]  
Chilla G. S., 2017, IEEE J BIOMED HEALTH, V99
[9]   Automatic classification of patients with Alzheimer's disease from structural MRI: A comparison of ten methods using the ADNI database [J].
Cuingnet, Remi ;
Gerardin, Emilie ;
Tessieras, Jerome ;
Auzias, Guillaume ;
Lehericy, Stephane ;
Habert, Marie-Odile ;
Chupin, Marie ;
Benali, Habib ;
Colliot, Olivier .
NEUROIMAGE, 2011, 56 (02) :766-781
[10]   Diffeomorphic brain mapping based on T1-weighted images: Improvement of registration accuracy by multichannel mapping [J].
Djamanakova, Aigerim ;
Faria, Andreia V. ;
Hsu, John ;
Ceritoglu, Can ;
Oishi, Kenichi ;
Miller, Michael I. ;
Hillis, Argye E. ;
Mori, Susumu .
JOURNAL OF MAGNETIC RESONANCE IMAGING, 2013, 37 (01) :76-84