Tumor immune microenvironment of self-identified African American and non-African American triple negative breast cancer

被引:10
作者
Marczyk, Michal [1 ,2 ]
Qing, Tao [3 ]
O'Meara, Tess [3 ,9 ]
Yagahoobi, Vesal [4 ]
Pelekanou, Vasiliki [4 ,10 ]
Bai, Yalai [4 ]
Reisenbichler, Emily [4 ]
Cole, Kimberly S. [4 ,11 ]
Li, Xiaotong [5 ]
Gunasekharan, Vignesh [2 ]
Ibrahim, Eiman [6 ]
Fanucci, Kristina [2 ]
Wei, Wei [2 ,7 ]
Rimm, David L. [2 ,3 ,4 ]
Pusztai, Lajos [2 ,3 ]
Blenman, Kim R. M. [2 ,3 ,8 ]
机构
[1] Silesian Tech Univ, Dept Data Sci & Engn, Gliwice, Poland
[2] Yale Univ, Yale Canc Ctr, New Haven, CT 06520 USA
[3] Yale Univ, Sect Med Oncol, Dept Internal Med, New Haven, CT 06520 USA
[4] Yale Univ, Dept Pathol, New Haven, CT USA
[5] Yale Univ, Dept Computat Biol & Bioinformat Biol & Biomed Sc, New Haven, CT USA
[6] Yale Univ, Dept Pharmacol, New Haven, CT USA
[7] Yale Univ, Dept Biostat, New Haven, CT USA
[8] Yale Univ, Dept Comp Sci, New Haven, CT 06520 USA
[9] Brigham & Womens Hosp, Dept Internal Med, 75 Francis St, Boston, MA 02115 USA
[10] Sanofi, Translat Med Early Dev, Precis Med Oncol Translat Med Oncol, Cambridge, MA USA
[11] Sema4 Genom, Branford, CT USA
基金
美国国家卫生研究院;
关键词
INFILTRATING LYMPHOCYTES; PROGNOSTIC VALUE; NEOADJUVANT CHEMOTHERAPY; EXPRESSION; MELANOTRANSFERRIN; SURVIVAL; TISSUES; PEMBROLIZUMAB; ASSOCIATION; LANDSCAPE;
D O I
10.1038/s41523-022-00449-3
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Differences in the tumor immune microenvironment may result in differences in prognosis and response to treatment in cancer patients. We hypothesized that differences in the tumor immune microenvironment may exist between African American (AA) and NonAA patients, due to ancestry-related or socioeconomic factors, that may partially explain differences in clinical outcomes. We analyzed clinically matched triple-negative breast cancer (TNBC) tissues from self-identified AA and NonAA patients and found that stromal TILs, PD-L1 IHC-positivity, mRNA expression of immune-related pathways, and immunotherapy response predictive signatures were significantly higher in AA samples (p < 0.05; Fisher's Exact Test, Mann-Whitney Test, Permutation Test). Cancer biology and metabolism pathways, TAM-M2, and Immune Exclusion were significantly higher in NonAA samples (p < 0.05; Permutation Test, Mann-Whitney Test). There were no differences in somatic tumor mutation burden. Overall, there is greater immune infiltration and inflammation in AA TNBC and these differences may impact response to immune checkpoint inhibitors and other therapeutic agents that modulate the immune microenvironment.
引用
收藏
页数:12
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共 62 条
  • [31] The Molecular Signatures Database Hallmark Gene Set Collection
    Liberzon, Arthur
    Birger, Chet
    Thorvaldsdottir, Helga
    Ghandi, Mahmoud
    Mesirov, Jill P.
    Tamayo, Pablo
    [J]. CELL SYSTEMS, 2015, 1 (06) : 417 - 425
  • [32] HLA-G Neo-Expression on Tumors
    Loustau, Maria
    Anna, Francois
    Drean, Raphaelle
    Lecomte, Martin
    Langlade-Demoyen, Pierre
    Caumartin, Julien
    [J]. FRONTIERS IN IMMUNOLOGY, 2020, 11
  • [33] Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    Love, Michael I.
    Huber, Wolfgang
    Anders, Simon
    [J]. GENOME BIOLOGY, 2014, 15 (12):
  • [34] Race and triple negative threats to breast cancer survival: a population-based study in Atlanta, GA
    Lund, Mary Jo
    Trivers, Katrina F.
    Porter, Peggy L.
    Coates, Ralph J.
    Leyland-Jones, Brian
    Brawley, Otis W.
    Flagg, Elaine W.
    O'Regan, Ruth M.
    Gabram, Sheryl G. A.
    Eley, J. William
    [J]. BREAST CANCER RESEARCH AND TREATMENT, 2009, 113 (02) : 357 - 370
  • [35] Loss of CD55 is associated with aggressive breast tumors
    Madjd, Z
    Durrant, LG
    Bradley, R
    Spendlove, I
    Ellis, IO
    Pinder, SE
    [J]. CLINICAL CANCER RESEARCH, 2004, 10 (08) : 2797 - 2803
  • [36] The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    McKenna, Aaron
    Hanna, Matthew
    Banks, Eric
    Sivachenko, Andrey
    Cibulskis, Kristian
    Kernytsky, Andrew
    Garimella, Kiran
    Altshuler, David
    Gabriel, Stacey
    Daly, Mark
    DePristo, Mark A.
    [J]. GENOME RESEARCH, 2010, 20 (09) : 1297 - 1303
  • [37] Meecham Amelia, 2020, Gene, V763S, P100023, DOI 10.1016/j.gene.2019.100023
  • [38] Neoadjuvant atezolizumab in combination with sequential nab-paclitaxel and anthracycline-based chemotherapy versus placebo and chemotherapy in patients with early-stage triple-negative breast cancer (IMpassion031): a randomised, double-blind, phase 3 trial
    Mittendorf, Elizabeth A.
    Zhang, Hong
    Barrios, Carlos H.
    Saji, Shigehira
    Jung, Kyung Hae
    Hegg, Roberto
    Koehler, Andreas
    Sohn, Joohyuk
    Iwata, Hiroji
    Telli, Melinda L.
    Ferrario, Cristiano
    Punie, Kevin
    Penault-Llorca, Frederique
    Patel, Shilpen
    Anh Nguyen Duc
    Liste-Hermoso, Mario
    Maiya, Vidya
    Molinero, Luciana
    Chui, Stephen Y.
    Harbeck, Nadia
    [J]. LANCET, 2020, 396 (10257) : 1090 - 1100
  • [39] Recent Advances in Our Understanding of HLA-G Biology: Lessons from a Wide Spectrum of Human Diseases
    Morandi, Fabio
    Rizzo, Roberta
    Fainardi, Enrico
    Rouas-Freiss, Nathalie
    Pistoia, Vito
    [J]. JOURNAL OF IMMUNOLOGY RESEARCH, 2016, 2016
  • [40] Newman AM, 2015, NAT METHODS, V12, P453, DOI [10.1038/NMETH.3337, 10.1038/nmeth.3337]