Complete Genome Sequence of the Metabolically Versatile Plant Growth-Promoting Endophyte Variovorax paradoxus S110

被引：138

作者：

Han, Jong-In ^{[1
]}

Choi, Hong-Kyu ^{[2
]}

Lee, Seung-Won ^{[3
,12
]}

Orwin, Paul M. ^{[4
]}

Kim, Jina ^{[1
]}

LaRoe, Sarah L. ^{[5
]}

Kim, Tae-gyu ^{[1
]}

O'Neil, Jennifer ^{[5
]}

Leadbetter, Jared R. ^{[6
,7
]}

Lee, Sang Yup ^{[8
]}

Hur, Cheol-Goo ^{[3
]}

Spain, Jim C. ^{[9
]}

Ovchinnikova, Galina ^{[10
]}

Goodwin, Lynne ^{[11
]}

Han, Cliff ^{[11
]}

机构：

[1] Korea Adv Inst Sci & Technol, Dept Civil & Environm Engn, Taejon 305701, South Korea

[2] Dong A Univ, Dept Genet Engn, Pusan, South Korea

[3] KRIBB, Bioinformat Res Ctr, Taejon, South Korea

[4] Calif State Univ San Bernardino, Dept Biol, San Bernardino, CA 92407 USA

[5] Rensselaer Polytech Inst, Dept Civil & Environm Engn, Troy, NY USA

[6] CALTECH, Div Biol, Pasadena, CA 91125 USA

[7] CALTECH, Div Environm Sci & Engn, Pasadena, CA 91125 USA

[8] Korea Adv Inst Sci & Technol, Dept Chem & Biomol Engn, Taejon 305701, South Korea

[9] Georgia Inst Technol, Sch Civil & Environm Engn, Atlanta, GA 30332 USA

[10] DOE Joint Genome Inst, Walnut Creek, CA USA

[11] Los Alamos Natl Lab, Los Alamos, NM USA

[12] Natl Acad Agr Sci, Genom Div, Dept Agr Bioresources, Suwon, South Korea

来源：

JOURNAL OF BACTERIOLOGY | 2011年 / 193卷 / 05期

关键词：

BACTERIAL ENDOPHYTES; STRAIN; DEGRADATION; BIODEGRADATION; COMMUNITIES; SYSTEMS; ACID; SOIL; CONSORTIUM; STRATEGIES;

D O I：

10.1128/JB.00925-10

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Variovorax paradoxus is a microorganism of special interest due to its diverse metabolic capabilities, including the biodegradation of both biogenic compounds and anthropogenic contaminants. V. paradoxus also engages in mutually beneficial interactions with both bacteria and plants. The complete genome sequence of V. paradoxus S110 is composed of 6,754,997 bp with 6,279 predicted protein-coding sequences within two circular chromosomes. Genomic analysis has revealed multiple metabolic features for autotrophic and heterotrophic lifestyles. These metabolic diversities enable independent survival, as well as a symbiotic lifestyle. Consequently, S110 appears to have evolved into a superbly adaptable microorganism that is able to survive in ever-changing environmental conditions. Based on our findings, we suggest V. paradoxus S110 as a potential candidate for agrobiotechnological applications, such as biofertilizer and biopesticide. Because it has many associations with other biota, it is also suited to serve as an additional model system for studies of microbe-plant and microbe-microbe interactions.

引用

页码：1183 / 1190

页数：8

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