A methodology for creating mutants of G-protein coupled receptors stabilized in active state by combining statistical thermodynamics and evolutionary molecular engineering

被引:1
作者
Yamamoto, Taisei [1 ]
Yasuda, Satoshi [1 ,2 ,3 ]
Kasai, Rinshi S. [4 ,5 ]
Nakano, Ryosuke [1 ]
Hikiri, Simon [6 ]
Sugaya, Kanna [1 ]
Hayashi, Tomohiko [7 ,8 ]
Ogasawara, Satoshi [1 ,2 ,3 ,9 ]
Shiroishi, Mitsunori [10 ]
Fujiwara, Takahiro K. [11 ]
Kinoshita, Masahiro [1 ,2 ,8 ,12 ]
Murata, Takeshi [1 ,2 ,3 ]
机构
[1] Chiba Univ, Grad Sch Sci, Dept Chem, Inage Ku, 1-33 Yayoi Cho, Chiba 2638522, Japan
[2] Chiba Univ, Membrane Prot Res Ctr, Chiba, Japan
[3] Chiba Univ, Mol Chiral Res Ctr, Chiba, Japan
[4] Gifu Univ, Inst Glyco Core Res iGCORE, Gifu, Japan
[5] Kyoto Univ, Inst Life & Med Sci, Kyoto, Japan
[6] Osaka Univ, Grad Sch Engn Sci, Osaka, Japan
[7] Niigata Univ, Fac Engn, Interdisciplinary Program Biomed Engn Assist Tech, Niigata, Japan
[8] Kyoto Univ, Inst Adv Energy, Uji, Kyoto 6110011, Japan
[9] Chiba Univ, Inst Adv Acad Res, Chiba, Japan
[10] Tokyo Univ Sci, Dept Biol Sci & Technol, Tokyo, Japan
[11] Kyoto Univ, Inst Integrated Cell Mat Sci WPI iCeMS, Kyoto, Japan
[12] Kyoto Univ, Ctr Promot Interdisciplinary Educ & Res, Kyoto, Japan
基金
日本学术振兴会;
关键词
active state; agonist; amino-acid mutation; configurational entropy; G protein; G-protein coupled receptor; hydrocarbon group; hydrogen bond; lipid molecule; site-directed saturation mutagenesis; ADENOSINE A(2A) RECEPTOR; EUKARYOTIC MEMBRANE-PROTEINS; THERMOSTABILIZING MUTATIONS; HIGH-THROUGHPUT; IDENTIFICATION; CONSTRUCTION; OPTIMIZATION; EXPRESSION; RHODOPSIN; DIFFUSION;
D O I
10.1002/pro.4425
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We challenged the stabilization of a G-protein coupled receptor (GPCR) in the active state solely by multiple amino-acid mutations without the agonist binding. For many GPCRs, the free energy of the active state is higher than that of the inactive state. When the inactive state is stabilized through the lowering of its free energy, the apparent midpoint temperature of thermal denaturation T-m exhibits a significant increase. However, this is not always the case for the stabilization of the active state. We constructed a modified version of our methodology combining statistical thermodynamics and evolutionary molecular engineering, which was recently developed for the inactive state. First, several residues to be mutated are determined using our statistical-thermodynamics theory. Second, a gene (mutant) library is constructed using Escherichia coli cells to efficiently explore most of the mutational space. Third, for the mutant screening, the mutants prepared in accordance with the library are expressed in engineered Saccharomyces cerevisiae YB14 cells which can grow only when a GPCR mutant stabilized in the active state has signaling function. For the adenosine A(2A) receptor tested, the methodology enabled us to sort out two triple mutants and a double mutant. It was experimentally corroborated that all the mutants exhibit much higher binding affinity for G protein than the wild type. Analyses indicated that the mutations make the structural characteristics shift toward those of the active state. However, only slight increases in T-m resulted from the mutations, suggesting the unsuitability of T-m to the stability measure for the active state.
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页数:16
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