The SCP2-thiolase-like protein (SLP) of Trypanosoma brucei is an enzyme involved in lipid metabolism

被引:7
作者
Harijan, Rajesh K. [1 ,2 ]
Mazet, Muriel [3 ,4 ]
Kiema, Tiila R. [1 ]
Bouyssou, Guillaume [5 ]
Alexson, Stefan E. H. [6 ]
Bergmann, Ulrich [1 ]
Moreau, Patrick [5 ]
Michels, Paul A. M. [7 ,8 ]
Bringaud, Frederic [3 ,4 ]
Wierenga, Rik K. [1 ]
机构
[1] Univ Oulu, Fac Biochem & Mol Med, Bioctr Oulu, FIN-90014 Oulu, Finland
[2] Albert Einstein Coll Med, Dept Biochem, 1300 Morris Pk Ave, Bronx, NY 10461 USA
[3] Univ Bordeaux, CNRS, UMR5536, Ctr Resonance Magnet Syst Biol RMSB, 146 Rue Leo Saignat, F-33076 Bordeaux, France
[4] Univ Bordeaux, CNRS, UMR5234, Lab Microbiol Fondamentale & Pathogenicite MFP, 146 Rue Leo Saignat, F-33076 Bordeaux, France
[5] Univ Bordeaux, CNRS, INRA Bordeaux Aquitaine, Lab Biogenese Membranaire,UMR 5200, Batiment A3 1er Etage,BP81, F-33883 Villenave Dornon, France
[6] Karolinska Inst, Div Clin Chem, Dept Lab Med, Karolinska Univ Hosp, SE-14186 Stockholm, Sweden
[7] Univ Edinburgh, Sch Biol Sci, Ctr Immun Infect & Evolut, Kings Bldg,Charlotte Auerbach Rd, Edinburgh EH9 3FL, Midlothian, Scotland
[8] Univ Edinburgh, Sch Biol Sci, Ctr Translat & Chem Biol, Kings Bldg,Charlotte Auerbach Rd, Edinburgh EH9 3FL, Midlothian, Scotland
基金
芬兰科学院;
关键词
Trypanosoma brucei; SCP2-thiolase; SCP2-thiolase-like protein; malonyl-CoA decarboxylase; malonyl-CoA:ACP transacylase; gene knockout; crystal structure; mitochondrial lipid metabolism; ACYL CARRIER PROTEIN; FATTY-ACID SYNTHASE; SUCCINATE COA-TRANSFERASE; CRYSTAL-STRUCTURE; MALONYL-COA; 3-KETOACYL-COA THIOLASE; 3-OXOACYL-COA THIOLASE; STRUCTURAL BASIS; MECHANISM; BIOSYNTHESIS;
D O I
10.1002/prot.25054
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bioinformatics studies have shown that the genomes of trypanosomatid species each encode one SCP2-thiolase-like protein (SLP), which is characterized by having the YDCF thiolase sequence fingerprint of the C beta 2-C alpha 2 loop. SLPs are only encoded by the genomes of these parasitic protists and not by those of mammals, including human. Deletion of the Trypanosoma brucei SLP gene (TbSLP) increases the doubling time of procyclic T. brucei and causes a 5-fold reduction of de novo sterol biosynthesis from glucose-and acetate-derived acetyl-CoA. Fluorescence analyses of EGFP-tagged TbSLP expressed in the parasite located the TbSLP in the mitochondrion. The crystal structure of TbSLP (refined at 1.75 angstrom resolution) confirms that TbSLP has the canonical dimeric thiolase fold. In addition, the structures of the TbSLP-acetoacetyl-CoA (1.90 angstrom) and TbSLP-malonyl-CoA (2.30 angstrom) complexes reveal that the two oxyanion holes of the thiolase active site are preserved. TbSLP binds malonyl-CoA tightly (K-d 90 mu M), acetoacetyl-CoA moderately (K-d 0.9 mM) and acetyl-CoA and CoA very weakly. TbSLP possesses low malonyl-CoA decarboxylase activity. Altogether, the data show that TbSLP is a mitochondrial enzyme involved in lipid metabolism. (C) 2016 Wiley Periodicals, Inc.
引用
收藏
页码:1075 / 1096
页数:22
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  • [31] Structural and biochemical characterization of MCAT from photosynthetic microorganism Synechocystis sp PCC 6803 reveal its stepwise catalytic mechanism
    Liu, Yinghui
    Feng, Yanbin
    Wang, Yayue
    Li, Xia
    Cao, Xupeng
    Xue, Song
    [J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2015, 457 (03) : 398 - 403
  • [32] The 1.8 angstrom crystal structure of the dimeric peroxisomal 3-Ketoacyl-CoA thiolase of Saccharomyces cerevisiae: Implications for substrate binding and reaction mechanism
    Mathieu, M
    Modis, Y
    Zeelen, JP
    Engel, CK
    Abagyan, RA
    Ahlberg, A
    Rasmussen, B
    Lamzin, VS
    Kunau, WH
    Wierenga, RK
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 273 (03) : 714 - 728
  • [33] The characterization and evolutionary relationships of a trypanosomal thiolase
    Mazet, Muriel
    Harijan, Rajesh K.
    Kiema, Tiila-Riika
    Haapalainen, Antti M.
    Morand, Pauline
    Morales, Jorge
    Bringaud, Frederic
    Wierenga, Rik K.
    Michels, Paul A. M.
    [J]. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 2011, 41 (12) : 1273 - 1283
  • [34] Phaser crystallographic software
    McCoy, Airlie J.
    Grosse-Kunstleve, Ralf W.
    Adams, Paul D.
    Winn, Martyn D.
    Storoni, Laurent C.
    Read, Randy J.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2007, 40 : 658 - 674
  • [35] The Thiolase Reaction Mechanism: The Importance of Asn316 and His348 for Stabilizing the Enolate Intermediate of the Claisen Condensation
    Merilainen, Gitte
    Poikela, Visa
    Kursula, Petri
    Wierenga, Rik K.
    [J]. BIOCHEMISTRY, 2009, 48 (46) : 11011 - 11025
  • [36] The threonine degradation pathway of the Trypanosoma brucei procyclic form: the main carbon source for lipid biosynthesis is under metabolic control
    Millerioux, Yoann
    Ebikeme, Charles
    Biran, Marc
    Morand, Pauline
    Bouyssou, Guillaume
    Vincent, Isabel M.
    Mazet, Muriel
    Riviere, Loic
    Franconi, Jean-Michel
    Burchmore, Richard J. S.
    Moreau, Patrick
    Barrett, Michael P.
    Bringaud, Frederic
    [J]. MOLECULAR MICROBIOLOGY, 2013, 90 (01) : 114 - 129
  • [37] ATP Synthesis-coupled and -uncoupled Acetate Production from Acetyl-CoA by Mitochondrial Acetate: Succinate CoA-transferase and Acetyl-CoA Thioesterase in Trypanosoma
    Millerioux, Yoann
    Morand, Pauline
    Biran, Marc
    Mazet, Muriel
    Moreau, Patrick
    Wargnies, Marion
    Ebikeme, Charles
    Deramchia, Kamel
    Gales, Lara
    Portais, Jean-Charles
    Boshart, Michael
    Franconi, Jean-Michel
    Bringaud, Frederic
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (21) : 17186 - 17197
  • [38] Enzymes of the mevalonate pathway of isoprenoid biosynthesis
    Miziorko, Henry M.
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2011, 505 (02) : 131 - 143
  • [39] Crystallographic analysis of the reaction pathway of Zoogloea ramigera biosynthetic thiolase
    Modis, Y
    Wierenga, RK
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2000, 297 (05) : 1171 - 1182
  • [40] Refinement of macromolecular structures by the maximum-likelihood method
    Murshudov, GN
    Vagin, AA
    Dodson, EJ
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1997, 53 : 240 - 255