Metagenomic analysis of lacustrine viral diversity along a latitudinal transect of the Antarctic Peninsula

被引:20
作者
Aguirre de Carcer, Daniel [1 ]
Lopez-Bueno, Alberto [1 ]
Alonso-Lobo, Juan M. [1 ]
Quesada, Antonio [2 ]
Alcami, Antonio [1 ]
机构
[1] Univ Autonoma Madrid, CSIC, Ctr Biol Mol Severo Ochoa, Campus Cantoblanco, E-28049 Madrid, Spain
[2] Univ Autonoma Madrid, Dept Biol, E-28049 Madrid, Spain
关键词
Antarctic Peninsula; lacustrine environments; viruses; metagenomics; latitudinal gradient; ssDNA viruses; MARINE VIRUSES; CLIMATE-CHANGE; COMMUNITY; AMPLIFICATION; BIOGEOGRAPHY; ECOSYSTEMS; MICROBIOTA; SEQUENCES; ALIGNMENT; GRADIENT;
D O I
10.1093/femsec/fiw074
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Environmental viruses constitute the most abundant biological entities on earth, and harbor an enormous genetic diversity. While their strong influence on the ecosystem is widely acknowledged, current knowledge about their diversity and distribution remains limited. Here we present the metagenomic study of viral communities from freshwater bodies located along a transect of the Antarctic Peninsula. These ecosystems were chosen on the basis of environmental and biogeographical variation. The results obtained indicate that the virus assemblages were diverse, and that the larger fraction represented viruses with no close relatives in the databases. Comparisons to existing metaviromes showed that the communities studied were dissimilar to other freshwater viromes including those from the Arctic. Finally, we observed no indication of there being a reduction in either viral richness or diversity estimates with increasing latitude along the studied transect, further adding to the controversy regarding the possible existence of latitudinal gradients of diversity in the microbial world.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 61 条
  • [31] Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
    Kleiner, Manuel
    Hooper, Lora V.
    Duerkop, Breck A.
    [J]. BMC GENOMICS, 2015, 16
  • [32] Previously unknown and highly divergent ssDNA viruses populate the oceans
    Labonte, Jessica M.
    Suttle, Curtis A.
    [J]. ISME JOURNAL, 2013, 7 (11) : 2169 - 2177
  • [33] Langmead B, 2012, NAT METHODS, V9, P357, DOI [10.1038/NMETH.1923, 10.1038/nmeth.1923]
  • [34] An integrative study of a meromictic lake ecosystem in Antarctica
    Lauro, Federico M.
    DeMaere, Matthew Z.
    Yau, Sheree
    Brown, Mark V.
    Ng, Charmaine
    Wilkins, David
    Raftery, Mark J.
    Gibson, John A. E.
    Andrews-Pfannkoch, Cynthia
    Lewis, Matthew
    Hoffman, Jeffrey M.
    Thomas, Torsten
    Cavicchioli, Ricardo
    [J]. ISME JOURNAL, 2011, 5 (05) : 879 - 895
  • [35] High Diversity of the Viral Community from an Antarctic Lake
    Lopez-Bueno, Alberto
    Tamames, Javier
    Velazquez, David
    Moya, Andres
    Quesada, Antonio
    Alcami, Antonio
    [J]. SCIENCE, 2009, 326 (5954) : 858 - 861
  • [36] Marine ecosystems: Bacterial photosynthesis genes in a virus
    Mann, NH
    Cook, A
    Millard, A
    Bailey, S
    Clokie, M
    [J]. NATURE, 2003, 424 (6950) : 741 - 741
  • [37] The Ediacaran microbiota and the survival of Snowball Earth conditions
    Moczydlowska, Malgorzata
    [J]. PRECAMBRIAN RESEARCH, 2008, 167 (1-2) : 1 - 15
  • [38] The distance decay of similarity in biogeography and ecology
    Nekola, JC
    White, PS
    [J]. JOURNAL OF BIOGEOGRAPHY, 1999, 26 (04) : 867 - 878
  • [39] IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    Peng, Yu
    Leung, Henry C. M.
    Yiu, S. M.
    Chin, Francis Y. L.
    [J]. BIOINFORMATICS, 2012, 28 (11) : 1420 - 1428
  • [40] Extreme responses to climate change in Antarctic lakes
    Quayle, WC
    Peck, LS
    Peat, H
    Ellis-Evans, JC
    Harrigan, PR
    [J]. SCIENCE, 2002, 295 (5555) : 645 - 645