The complete chloroplast genome sequence of Rubus lambertianus var. glaber: sequence divergence and phylogenetic application

被引：5

作者：

Chen, Qing ^{[1
]}

Wang, Yan ^{[2
]}

Wang, Xiao-rong ^{[1
,2
]}

Tang, Hao-ru ^{[1
,2
]}

机构：

[1] Sichuan Agr Univ, Coll Hort, Chengdu, Sichuan, Peoples R China

[2] Sichuan Agr Univ, Inst Pomol & Olericulture, Chengdu, Sichuan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Chloroplast; Rubus lambertianus var; glaber; sequence divergence; phylogeny; VERSATILE;

D O I：

10.1080/23802359.2020.1731373

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Rubus lambertianus var. glaber is an excellent wild resource as a genetic donor. In this study, we sequenced the complete chloroplast genome of this species and evaluated its application in sequence diversity and phylogenetic analysis. The complete chloroplast genome exhibits a typical quadripartite structure, with two inverted repeats (257,790 bp each) separated by the large single-copy (LSC, 86,122 bp) and small single-copy (SSC, 18,867 bp) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA, and 8 rRNA coding genes.Maximum-likelihood (ML) based phylogenetic analysis indicated that the R. lambertianus var. glaber has the closest relationship to Rubus fockeanus.

引用

页码：1261 / 1262

页数：2

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