Genome-Wide Analysis of Biotin Biosynthesis in Eukaryotic Photosynthetic Algae

被引:6
作者
Cui, Hongli [1 ,2 ]
Wang, Yipeng [1 ]
Zhang, Hongyu [1 ,2 ]
Wang, Yinchu [1 ,2 ]
Qin, Song [1 ]
机构
[1] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China
[2] Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China
基金
中国国家自然科学基金;
关键词
Biotin biosynthesis; Molecular evolution; Coevolution; Comparative genomics; Algae; SACCHAROMYCES-CEREVISIAE; CYANIDIOSCHYZON-MEROLAE; ARABIDOPSIS-THALIANA; CAROTENOID BIOSYNTHESIS; SYNTHASE REACTION; ESCHERICHIA-COLI; GENE-TRANSFER; RED ALGAE; EVOLUTION; ORIGIN;
D O I
10.1007/s11105-011-0352-z
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Biotin is a cofactor responsible for carbon dioxide transfer in several carboxylase enzymes, which play a significant role in various metabolic reactions such as fatty acid synthesis, branched chain amino acid catabolism, and gluconeogenesis. Biotin is also involved in citric acid cycle, which is the process of biochemical energy generation during aerobic respiration. Though the function of biotin in the growth of algae has been extensively investigated, little is known about the biosynthetic routes of biotin in the algal kingdom. In the present study, 44 biotin biosynthesis-related genes were identified from 14 eukaryotic photosynthetic algal genomes by BLASTP and TBLASN programs. A comprehensive analysis was performed to characterize distribution, phylogeny, structure domains, and coevolution patterns of those genes. Forty-four biotin biosynthesis-related enzymes (BBREs) were found to be distributed in three groups: 7-keto-8-aminopelargonic acid synthase, diaminopelargonic acid synthase/dethiobiotin synthetase, and biotin synthase. Structure domains were considerably conserved among the subfamilies of BBREs. The intramolecular coevolutionary sites are widely distributed in biotin synthase. The present study provides new insights into the origin and evolution of biotin biosynthetic pathways in eukaryotic photosynthetic algae. Furthermore, the characterization of biotin biosynthesis-related genes from algae will promote the identification and functional studies of BBREs.
引用
收藏
页码:421 / 432
页数:12
相关论文
共 61 条
  • [51] MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    Tamura, Koichiro
    Dudley, Joel
    Nei, Masatoshi
    Kumar, Sudhir
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (08) : 1596 - 1599
  • [52] CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE
    THOMPSON, JD
    HIGGINS, DG
    GIBSON, TJ
    [J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (22) : 4673 - 4680
  • [53] An update on carotenoid biosynthesis in algae: phylogenetic evidence for the existence of two classes of phytoene synthase
    Tran, Duc
    Haven, James
    Qiu, Wei-Gang
    Polle, Juergen E. W.
    [J]. PLANTA, 2009, 229 (03) : 723 - 729
  • [54] Elucidating biosynthetic pathways for vitamins and cofactors
    Webb, Michael E.
    Marquet, Andree
    Mendel, Ralf R.
    Rebeille, Fabrice
    Smith, Alison G.
    [J]. NATURAL PRODUCT REPORTS, 2007, 24 (05) : 988 - 1008
  • [55] A molecular timeline for the origin of photosynthetic eukaryotes
    Yoon, HS
    Hackett, JD
    Ciniglia, C
    Pinto, G
    Bhattacharya, D
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (05) : 809 - 818
  • [56] Uptake, localization, and noncarboxylase roles of biotin
    Zempleni, J
    [J]. ANNUAL REVIEW OF NUTRITION, 2005, 25 : 175 - 196
  • [57] Biotin biochemistry and human requirements
    Zempleni, J
    Mock, DM
    [J]. JOURNAL OF NUTRITIONAL BIOCHEMISTRY, 1999, 10 (03) : 128 - 138
  • [58] Biotin
    Zempleni, Janos
    Wijeratne, Subhashinee S. K.
    Hassan, Yousef I.
    [J]. BIOFACTORS, 2009, 35 (01) : 36 - 46
  • [59] Proteomic Analysis of Interactions Between the Generalist Herbivore Spodoptera exigua (Lepidoptera: Noctuidae) and Arabidopsis thaliana
    Zhang, Ju-Hong
    Sun, Li-Wen
    Liu, Lin-Lin
    Lian, Jie
    An, Shao-Li
    Wang, Xu
    Zhang, Jing
    Jin, Jun-Ling
    Li, Shan-Yu
    Xi, Jing-Hui
    [J]. PLANT MOLECULAR BIOLOGY REPORTER, 2010, 28 (02) : 324 - 333
  • [60] THE GENE FOR BIOTIN SYNTHASE FROM SACCHAROMYCES-CEREVISIAE - CLONING, SEQUENCING, AND COMPLEMENTATION OF ESCHERICHIA-COLI STRAINS LACKING BIOTIN SYNTHASE
    ZHANG, SG
    SANYAL, I
    BULBOACA, GH
    RICH, A
    FLINT, DH
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1994, 309 (01) : 29 - 35