Surface-enhanced Raman spectroscopic analysis of centrifugally filtered blood serum samples of hepatitis C patients

被引:12
|
作者
Shakeel, Samra [1 ]
Nawaz, Haq [1 ]
Majeed, Muhammad Irfan [1 ]
Rashid, Nosheen [2 ]
Javed, Muhammad Rizwan [3 ]
Tariq, Ayesha [1 ]
Majeed, Beenish [1 ]
Sehar, Aafia [1 ]
Murtaza, Sania [1 ]
Sadaf, Nimra [1 ]
Rimsha, Gull [1 ]
Amin, Imran [4 ]
机构
[1] Univ Agr Faisalabad, Dept Chem, Faisalabad 38000, Pakistan
[2] Univ Educ, Dept Chem, Faisalabad Campus, Faisalabad 38000, Pakistan
[3] Govt Coll Univ Faisalabad GCUF, Dept Bioinformat & Biotechnol, Faisalabad 38000, Pakistan
[4] PINUM Hosp, PCR Lab, Faisalabad 38000, Pakistan
关键词
Surface -enhanced Raman spectroscopy; Centrifugal filters of 50 kda; Blood serum; Hepatitis C; Principal component analysis; Partial least square regression analysis; POLYMERASE-CHAIN-REACTION; IDENTIFICATION;
D O I
10.1016/j.pdpdt.2022.102949
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Raman spectroscopy is able to analyze non-invasively, disease related to body fluids. Objectives: For the qualitative and quantitative analysis of HCV serum samples surface-enhanced Raman spectroscopy (SERS) based method is developed. Method: Surface-enhanced Raman spectroscopy (SERS) technique is employed for analysis of filtrate portions of blood serum samples of hepatitis C virus (HCV) infected patients and healthy ones by using 50 kDa centrifugal filter device. The filtrate portions of the serum obtained in this way contain proteins smaller than 50 kDa and removal of bigger size protein which allows to acquire SERS spectral features of smaller proteins more effectively which are probably associated with Hepatitis C infection. Moreover, SERS spectral features of the filtrates of different level of viral load including low, medium and high viral loads are compared with SERS spectral features of the filtrate portions of healthy/control serum samples. SERS spectral data sets of different samples are further analyzed by using multivariate data analysis techniques such as principal component analysis (PCA) and partial least square regression (PLSR). Some SERS spectral features are solely observed in the filtrate portions of the serum samples of hepatitis C and their intensities are increased as the level of viral load increases and might be used for HCV diagnosis. Results: PCA was found helpful for differentiation of SERS spectral data sets of filtrate portions of the serum samples of hepatitis C and healthy persons. The PLSR model helped for the quantification of viral loads in the unknown serum samples with 99% accuracy.
引用
收藏
页数:10
相关论文
共 50 条
  • [1] Surface-enhanced Raman spectroscopic analysis of centrifugally filtered HBV serum samples
    Bari, Rana Zaki Abdul
    Nawaz, Haq
    Majeed, Muhammad Irfan
    Rashid, Nosheen
    Iqbal, Maham
    Akram, Maria
    Yaqoob, Nimra
    Yousaf, Sadia
    Mushtaq, Aqsa
    Almas, Farakh
    Shahzadi, Anam
    Amin, Imran
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2022, 38
  • [2] Comparison of surface-enhanced Raman spectral data sets of filtrate portions of serum samples of hepatitis B and Hepatitis C infected patients obtained by centrifugal filtration
    Nawaz, Muhammad Zaman
    Nawaz, Haq
    Majeed, Muhammad Irfan
    Rashid, Nosheen
    Javed, Muhammad Rizwan
    Naz, Saima
    Ali, Muhammad Zeeshan
    Sabir, Amina
    Sadaf, Nimra
    Raza, Ali
    Shakeel, Muhammad
    Ali, Zain
    Amin, Imran
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2023, 42
  • [3] Surface-enhanced Raman spectroscopy for characterization of filtrate portions of blood serum samples of typhoid patients
    Akram, Maria
    Majeed, Muhammad Irfan
    Nawaz, Haq
    Rashid, Nosheen
    Javed, Muhammad Rizwan
    Ali, Muhammad Zeeshan
    Raza, Ali
    Shakeel, Muhammad
    Hasan, Hafiz Mahmood ul
    Ali, Zain
    Ehsan, Usama
    Shahid, Muhammad
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2022, 40
  • [4] Surface enhanced Raman spectroscopy of RNA samples extracted from blood of hepatitis C patients for quantification of viral loads
    Nasir, Saira
    Majeed, Muhammad Irfan
    Nawaz, Haq
    Rashid, Nosheen
    Ali, Saqib
    Farooq, Sidra
    Kashif, Muhammad
    Rafiq, Sidra
    Bano, Saira
    Ashraf, Muhammad Naeem
    Abubakar, Muhammad
    Ahmad, Shamsheer
    Rehman, Asma
    Amin, Imran
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2021, 33
  • [5] Characterization and prediction of viral loads of Hepatitis B serum samples by using surface-enhanced Raman spectroscopy (SERS)
    Ahmad, Shamsheer
    Majeed, Muhammad Irfan
    Nawaz, Haq
    Javed, Muhammad Rizwan
    Rashid, Nosheen
    Abubakar, Muhammad
    Batool, Fatima
    Bashir, Saba
    Kashif, Muhammad
    Ali, Saqib
    Tahira, Mamoona
    Tabbasum, Shaheera
    Amin, Imran
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2021, 35
  • [6] Surface Enhanced Raman Spectroscopy of the serum samples for the diagnosis of Hepatitis C and prediction of the viral loads
    Kashif, Muhammad
    Majeed, Muhammad Irfan
    Hanif, Muhammad Asif
    Rehman, Ateeq Ur
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2020, 242
  • [7] Surface-enhanced Raman spectroscopy analysis of serum samples of typhoid patients of different stages
    Tahira, Maimoona
    Nawaz, Haq
    Majeed, Muhammad Irfan
    Rashid, Nosheen
    Tabbasum, Shaheera
    Abubakar, Muhammad
    Ahmad, Shamsheer
    Akbar, Saba
    Bashir, Saba
    Kashif, Muhammad
    Ali, Saqib
    Hyat, Hamza
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2021, 34
  • [8] Surface-enhanced Raman spectroscopy for analysis of PCR products of viral RNA of hepatitis C patients
    Rafiq, Sidra
    Majeed, Muhammad Irfan
    Nawaz, Haq
    Rashid, Nosheen
    Yaqoob, Umer
    Batool, Fatima
    Bashir, Saba
    Akbar, Saba
    Abubakar, Muhammad
    Ahmad, Shamsheer
    Ali, Saqib
    Kashif, Muhammad
    Amin, Imran
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2021, 259
  • [9] Surface-enhanced Raman spectral analysis for comparison of PCR products of hepatitis B and hepatitis C
    Batool, Fatima
    Nawaz, Haq
    Majeed, Muhammad Irfan
    Rashid, Nosheen
    Bashir, Saba
    Bano, Saira
    Tahir, Fatima
    ul Haq, Anwar
    Saleem, Mudassar
    Nawaz, Muhammad Zaman
    Almas, Farakh
    Amin, Imran
    PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 2021, 35
  • [10] Surface-enhanced Raman spectroscopy for the characterization of filtrate portions of hepatitis B blood serum samples using 100 kDa ultra filtration devices
    Salfi, Abu Bakar
    Hussain, Munawar
    Majeed, Muhammad Irfan
    Nawaz, Haq
    Rashid, Nosheen
    Albekairi, Norah A.
    Alshammari, Abdulrahman
    Yousaf, Arslan
    Ullah, Muhammad Hafeez
    Fatima, Eman
    Mehmood, Sana
    Hakeem, Munazza
    Amin, Imran
    Javed, Mahrosh
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2025, 333