Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features

被引:37
作者
de Farias, Erick Costa [1 ]
di Noia, Christian [2 ]
Han, Changhee [3 ]
Sala, Evis [4 ,5 ]
Castelli, Mauro [1 ]
Rundo, Leonardo [4 ,5 ]
机构
[1] Univ Nova Lisboa, NOVA Informat Management Sch NOVA IMS, P-1070312 Lisbon, Portugal
[2] Univ Milano Bicocca, Dept Phys, I-20126 Milan, Italy
[3] Saitama Prefectural Univ, Saitama 3438540, Japan
[4] Univ Cambridge, Dept Radiol, Cambridge CB2 0QQ, England
[5] Univ Cambridge, Cancer Res UK Cambridge Ctr, Cambridge CB2 0RE, England
基金
英国惠康基金;
关键词
NETWORKS;
D O I
10.1038/s41598-021-00898-z
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Robust machine learning models based on radiomic features might allow for accurate diagnosis, prognosis, and medical decision-making. Unfortunately, the lack of standardized radiomic feature extraction has hampered their clinical use. Since the radiomic features tend to be affected by low voxel statistics in regions of interest, increasing the sample size would improve their robustness in clinical studies. Therefore, we propose a Generative Adversarial Network (GAN)-based lesion-focused framework for Computed Tomography (CT) image Super-Resolution (SR); for the lesion (i. e., cancer) patch-focused training, we incorporate Spatial Pyramid Pooling (SPP) into GAN-Constrained by the Identical, Residual, and Cycle Learning Ensemble (GAN-CIRCLE). At 2 x SR, the proposed model achieved better perceptual quality with less blurring than the other considered state-of-the-art SR methods, while producing comparable results at 4 x SR. We also evaluated the robustness of our model's radiomic feature in terms of quantization on a different lung cancer CT dataset using Principal Component Analysis (PCA). Intriguingly, the most important radiomic features in our PCAbased analysis were the most robust features extracted on the GAN-super-resolved images. These achievements pave the way for the application of GAN-based image Super-Resolution techniques for studies of radiomics for robust biomarker discovery.
引用
收藏
页数:12
相关论文
共 54 条
  • [1] Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
    Aerts, Hugo J. W. L.
    Velazquez, Emmanuel Rios
    Leijenaar, Ralph T. H.
    Parmar, Chintan
    Grossmann, Patrick
    Cavalho, Sara
    Bussink, Johan
    Monshouwer, Rene
    Haibe-Kains, Benjamin
    Rietveld, Derek
    Hoebers, Frank
    Rietbergen, Michelle M.
    Leemans, C. Rene
    Dekker, Andre
    Quackenbush, John
    Gillies, Robert J.
    Lambin, Philippe
    [J]. NATURE COMMUNICATIONS, 2014, 5
  • [2] Fast, Accurate, and Lightweight Super-Resolution with Cascading Residual Network
    Ahn, Namhyuk
    Kang, Byungkon
    Sohn, Kyung-Ah
    [J]. COMPUTER VISION - ECCV 2018, PT X, 2018, 11214 : 256 - 272
  • [3] TEXTURAL FEATURES CORRESPONDING TO TEXTURAL PROPERTIES
    AMADASUN, M
    KING, R
    [J]. IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS, 1989, 19 (05): : 1264 - 1274
  • [4] AI applications to medical images: From machine learning to deep learning
    Castiglioni, Isabella
    Rundo, Leonardo
    Codari, Marina
    Leo, Giovanni Di
    Salvatore, Christian
    Interlenghi, Matteo
    Gallivanone, Francesca
    Cozzi, Andrea
    D'Amico, Natascha Claudia
    Sardanelli, Francesco
    [J]. PHYSICA MEDICA-EUROPEAN JOURNAL OF MEDICAL PHYSICS, 2021, 83 : 9 - 24
  • [5] Super-resolution musculoskeletal MRI using deep learning
    Chaudhari, Akshay S.
    Fang, Zhongnan
    Kogan, Feliks
    Wood, Jeff
    Stevens, Kathryn J.
    Gibbons, Eric K.
    Lee, Jin Hyung
    Gold, Garry E.
    Hargreaves, Brian A.
    [J]. MAGNETIC RESONANCE IN MEDICINE, 2018, 80 (05) : 2139 - 2154
  • [6] Efficient and Accurate MRI Super-Resolution Using a Generative Adversarial Network and 3D Multi-level Densely Connected Network
    Chen, Yuhua
    Shi, Feng
    Christodoulou, Anthony G.
    Xie, Yibin
    Zhou, Zhengwei
    Li, Debiao
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2018, PT I, 2018, 11070 : 91 - 99
  • [7] The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository
    Clark, Kenneth
    Vendt, Bruce
    Smith, Kirk
    Freymann, John
    Kirby, Justin
    Koppel, Paul
    Moore, Stephen
    Phillips, Stanley
    Maffitt, David
    Pringle, Michael
    Tarbox, Lawrence
    Prior, Fred
    [J]. JOURNAL OF DIGITAL IMAGING, 2013, 26 (06) : 1045 - 1057
  • [8] Cox R., 2004, Neuroimage, V22
  • [9] Reliability and prognostic value of radiomic features are highly dependent on choice of feature extraction platform
    Fornacon-Wood, Isabella
    Mistry, Hitesh
    Ackermann, Christoph J.
    Blackhall, Fiona
    McPartlin, Andrew
    Faivre-Finn, Corinne
    Price, Gareth J.
    O'Connor, James P. B.
    [J]. EUROPEAN RADIOLOGY, 2020, 30 (11) : 6241 - 6250
  • [10] Galloway MM., 1975, COMPUT GRAPHICS IMAG, V4, DOI [10.1016/S0146-664X(75)80008-6, DOI 10.1016/S0146-664X(75)80008-6]