Identification of an eight-gene prognostic signature for lung adenocarcinoma

被引:67
作者
Li, Shicheng [1 ]
Xuan, Yunpeng [1 ]
Gao, Bing [2 ]
Sun, Xiao [1 ]
Miao, Shuncheng [1 ]
Lu, Tong [1 ]
Wang, Yuanyong [1 ]
Jiao, Wenjie [1 ]
机构
[1] Qingdao Univ, Affiliated Hosp, Dept Thorac Surg, 38 Dengzhou Rd, Qingdao 266000, Peoples R China
[2] Qingdao Univ, Sch Basic Med, Qingdao, Peoples R China
关键词
RNA-seq; prognostic; signature; lung adenocarcinoma; CELL-PROLIFERATION; CANCER; GENE; EXPRESSION;
D O I
10.2147/CMAR.S173941
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Lung adenocarcinoma (LUAD) is the leading cause of cancer-related death worldwide. The main obstacle to early diagnosis or monitoring of patients at high risk of poor survival has been the lack of essential predictive biomarkers. Methods: RNA-sequencing was performed on LUAD affected tissue and paired adjacent to noncancerous tissue samples and Gene Expression Omnibus dataset GSE19188 and GSE33532 were used to obtain an intersection of differential expressed genes and construct a protein-protein interaction network to get hub genes. Then corresponding overall survival information of two cohorts of LUAD patients from our hospital and The Cancer Genome Atlas project-LUAD were included in the present study. An analysis of the Kyoto Encyclopedia of Genes and Genomes database and Gene Ontology were carried out to study the signature mechanism. Results: In our study, we identified eight candidate genes (DLGAP5, KIF11, RAD51AP1, CCNB1, AURKA, CDC6, OIP5 and NCAPG) closely related to survival in LUAD. A linear prognostic model of the eight genes was constructed and weighted by the regression coefficient (beta) from the multivariate Cox regression analysis of The Cancer Genome Atlas-LUAD cohort to divide patients into low-and high-risk groups. The prognostic ability of the signature was validated in LUAD patients at our hospital. Patients assigned to the high-risk group exhibited poor overall survival compared to patients in the low-risk group. Finally, functional enrichment analysis showed that cell division played a vital role in the development of LUAD. Conclusion: The study identified an mRNA signature including eight genes, which may serve as a potential prognostic marker of LUAD.
引用
收藏
页码:3383 / 3392
页数:10
相关论文
共 23 条
[1]   SurvExpress: An Online Biomarker Validation Tool and Database for Cancer Gene Expression Data Using Survival Analysis [J].
Aguirre-Gamboa, Raul ;
Gomez-Rueda, Hugo ;
Martinez-Ledesma, Emmanuel ;
Martinez-Torteya, Antonio ;
Chacolla-Huaringa, Rafael ;
Rodriguez-Barrientos, Alberto ;
Tamez-Pena, Jose G. ;
Trevino, Victor .
PLOS ONE, 2013, 8 (09)
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]   Identification of cancer biomarkers of prognostic value using specific gene regulatory networks (GRN): a novel role of RAD51AP1 for ovarian and lung cancers [J].
Chudasama, Dimple ;
Bo, Valeria ;
Hall, Marcia ;
Anikin, Vladimir ;
Jeyaneethi, Jeyarooban ;
Gregory, Jane ;
Pados, George ;
Tucker, Allan ;
Harvey, Amanda ;
Pink, Ryan ;
Karteris, Emmanouil .
CARCINOGENESIS, 2018, 39 (03) :407-417
[4]   Specific gene expression signatures induced by the multiple oncogenic alterations that occur within the PTEN/PI3K/AKT pathway in lung cancer [J].
De Marco, Carmela ;
Laudanna, Carmelo ;
Rinaldo, Nicola ;
Oliveira, Duarte Mendes ;
Ravo, Maria ;
Weisz, Alessandro ;
Ceccarelli, Michele ;
Caira, Elvira ;
Rizzuto, Antonia ;
Zoppoli, Pietro ;
Malanga, Donatella ;
Viglietto, Giuseppe .
PLOS ONE, 2017, 12 (06)
[5]  
Demchak Barry, 2014, F1000Res, V3, P151, DOI 10.12688/f1000research.4492.2
[6]   Non-Small Cell Lung Cancer, Version 2.2013 Featured Updates to the NCCN Guidelines [J].
Ettinger, David S. ;
Akerley, Wallace ;
Borghaei, Hossein ;
Chang, Andrew C. ;
Cheney, Richard T. ;
Chirieac, Lucian R. ;
D'Amico, Thomas A. ;
Demmy, Todd L. ;
Govindan, Ramaswamy ;
Grannis, Frederic W., Jr. ;
Grant, Stefan C. ;
Horn, Leora ;
Jahan, Thierry M. ;
Komaki, Ritsuko ;
Kong, Feng-Ming ;
Kris, Mark G. ;
Krug, Lee M. ;
Lackner, Rudy P. ;
Lennes, Inga T. ;
Loo, Billy W., Jr. ;
Martins, Renato ;
Otterson, Gregory A. ;
Patel, Jyoti D. ;
Pinder-Schenck, Mary C. ;
Pisters, Katherine M. ;
Reckamp, Karen ;
Riely, Gregory J. ;
Rohren, Eric ;
Shapiro, Theresa A. ;
Swanson, Scott J. ;
Tauer, Kurt ;
Wood, Douglas E. ;
Yang, Stephen C. ;
Gregory, Kristina ;
Hughes, Miranda .
JOURNAL OF THE NATIONAL COMPREHENSIVE CANCER NETWORK, 2013, 11 (06) :645-653
[7]   Chk1-induced CCNB1 overexpression promotes cell proliferation and tumor growth in human colorectal cancer [J].
Fang, Yifeng ;
Yu, Hong ;
Liang, Xiao ;
Xu, Junfen ;
Cai, Xiujun .
CANCER BIOLOGY & THERAPY, 2014, 15 (09) :1268-1279
[8]   Clinical Value and Prospective Pathway Signaling of MicroRNA-375 in Lung Adenocarcinoma: A Study Based on the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) and Bioinformatics Analysis [J].
Gan, Ting-qing ;
Chen, Wen-jie ;
Qin, Hui ;
Huang, Su-ning ;
Yang, Li-hua ;
Fang, Ye-ying ;
Pan, Lin-jiang ;
Li, Zu-yun ;
Chen, Gang .
MEDICAL SCIENCE MONITOR, 2017, 23 :2453-2464
[9]   Aurora kinase A (AURKA) expression in colorectal cancer liver metastasis is associated with poor prognosis [J].
Goos, J. A. C. M. ;
Coupe, V. M. H. ;
Diosdado, B. ;
Diemen, P. M. Delis-Van ;
Karga, C. ;
Belien, J. A. M. ;
Carvalho, B. ;
van den Tol, M. P. ;
Verheul, H. M. W. ;
Geldof, A. A. ;
Meijer, G. A. ;
Hoekstra, O. S. ;
Fijneman, R. J. A. .
BRITISH JOURNAL OF CANCER, 2013, 109 (09) :2445-2452
[10]   Opa interacting protein 5 acts as an oncogene in bladder cancer [J].
He, Xuefeng ;
Hou, Jianquan ;
Ping, Jigen ;
Wen, Duangai ;
He, Jun .
JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2017, 143 (11) :2221-2233