Bromodomain-containing subunits BRD1, BRD2, and BRD13 are required for proper functioning of SWI/SNF complexes in Arabidopsis

被引:24
作者
Jaronczyk, Kamila [1 ]
Sosnowska, Katarzyna [2 ]
Zaborowski, Adam [1 ,4 ]
Pupel, Piotr [3 ]
Bucholc, Maria [2 ]
Malecka, Ewelina [1 ]
Siwirykow, Nina [1 ]
Stachula, Paulina [1 ]
Iwanicka-Nowicka, Roksana [1 ,2 ]
Koblowska, Marta [1 ,2 ]
Jerzmanowski, Andrzej [1 ,2 ]
Archacki, Rafal [1 ,2 ]
机构
[1] Univ Warsaw, Fac Biol, Lab Syst Biol, PL-02106 Warsaw, Poland
[2] PAS, Inst Biochem & Biophys, PL-02106 Warsaw, Poland
[3] Univ Warmia & Mazury, Dept Plant Physiol Genet & Biotechnol, PL-10719 Olsztyn, Poland
[4] Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany
关键词
Arabidopsis; chromatin remodeling; SWI/SNF complex; gene regulation; bromodomain-containing proteins; BRD; CHROMATIN-REMODELING COMPLEXES; PLAY DISTINCT ROLES; HISTONE DEACETYLASE; ATPASE BRAHMA; BINDING; TRANSCRIPTION; RESISTANCE; RESPONSES; SELECTION; PROTEINS;
D O I
10.1016/j.xplc.2021.100174
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
SWI/SNF chromatin remodelers are evolutionarily conserved multiprotein complexes that use the energy of ATP hydrolysis to change chromatin structure. A characteristic feature of SWI/SNF remodelers is the occurrence in both the catalytic ATPase subunit and some auxiliary subunits, of bromodomains, the protein motifs capable of binding acetylated histones. Here, we report that the Arabidopsis bromodomain-containing proteins BRD1, BRD2, and BRD13 are likely true SWI/SNF subunits that interact with the core SWI/SNF components SWI3C and SWP73B. Loss of function of each single BRD protein caused early flowering but had a negligible effect on other developmental pathways. By contrast, a brd triple mutation (brdx3) led to more pronounced developmental abnormalities, indicating functional redundancy among the BRD proteins. The brdx3 phenotypes, including hypersensitivity to abscisic acid and the gibberellin biosynthesis inhibitor paclobutrazol, resembled those of SWI/SNF mutants. Furthermore, the BRM protein level and occupancy at the direct target loci SCL3, ABI5, and SVP were reduced in the brdx3 mutant back-ground. Finally, a brdx3 brm-3 quadruple mutant, in which SWI/SNF complexes were devoid of all constit-uent bromodomains, phenocopied a loss-of-function mutation in BRM. Taken together, our results demon-strate the relevance of BRDs as SWI/SNF subunits and suggest their cooperation with the bromodomain of BRM ATPase.
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页数:15
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