Stability analysis of genetic regulatory network with additive noises

被引:13
作者
Jin, Yufang [1 ]
Lindsey, Merry [2 ]
机构
[1] Univ Texas San Antonio, Dept Elect & Comp Engn, San Antonio, TX 78249 USA
[2] Univ Texas Hlth Sci Ctr San Antonio, Dept Med, Div Cardiol, San Antonio, TX 78249 USA
关键词
Additive Noise; Error Dynamic; Genetic Network; Boolean Network; Transcription Rate;
D O I
10.1186/1471-2164-9-S1-S21
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network components and transcriptional rates are critical to the output behavior of the system. Though transcriptional rates cannot be measured in vivo, biologists have shown that they are alterable through artificial factors in vitro. Results: This study presents the theoretical research work on a novel nonlinear control and stability analysis of genetic regulatory networks. The proposed control scheme can drive the genetic regulatory network to desired levels by adjusting transcriptional rates. Asymptotic stability proof is conducted with Lyapunov argument for both noise-free and additive noises cases. Computer simulation results show the effectiveness of the control design and robustness of the regulation scheme with additive noises. Conclusions: With the knowledge of interaction between transcriptional factors and gene products, the research results can be applied in the design of model-based experiments to regulate gene expression profiles.
引用
收藏
页数:9
相关论文
共 26 条
[1]  
[Anonymous], 2002, NONLINEAR SYSTEMS AN
[2]   Fingers reach for the genome [J].
Ansari, AZ .
NATURE BIOTECHNOLOGY, 2003, 21 (03) :242-243
[3]   Positive feedback in eukaryotic gene networks:: cell differentiation by graded to binary response conversion [J].
Becskei, A ;
Séraphin, B ;
Serrano, L .
EMBO JOURNAL, 2001, 20 (10) :2528-2535
[4]   Engineering polydactyl zinc-finger transcription factors [J].
Beerli, RR ;
Barbas, CF .
NATURE BIOTECHNOLOGY, 2002, 20 (02) :135-141
[5]   Controlling protein association and subcellular localization with a synthetic ligand that induces heterodimerization of proteins [J].
Belshaw, PJ ;
Ho, SN ;
Crabtree, GR ;
Schreiber, SL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (10) :4604-4607
[6]   Stability of genetic regulatory networks with time delay [J].
Chen, LN ;
Aihara, K .
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 2002, 49 (05) :602-608
[7]   External control in Markovian genetic regulatory networks: the imperfect information case [J].
Datta, A ;
Choudhary, A ;
Bittner, ML ;
Dougherty, ER .
BIOINFORMATICS, 2004, 20 (06) :924-930
[8]   External control in Markovian Genetic Regulatory Networks [J].
Datta, A ;
Choudhary, A ;
Bittner, ML ;
Dougherty, ER .
MACHINE LEARNING, 2003, 52 (1-2) :169-191
[9]   Modeling and simulation of genetic regulatory systems: A literature review [J].
De Jong, H .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2002, 9 (01) :67-103
[10]   GENETIC-REGULATION - LAC CONTROL REGION [J].
DICKSON, RC ;
ABELSON, J ;
BARNES, WM ;
REZNIKOFF, WS .
SCIENCE, 1975, 187 (4171) :27-35