Impact of Concurrent Genomic Alterations Detected by Comprehensive Genomic Sequencing on Clinical Outcomes in East-Asian Patients with EGFR-Mutated Lung Adenocarcinoma

被引:20
作者
Sato, Seijiro [1 ]
Nagahashi, Masayuki [2 ]
Koike, Terumoto [1 ]
Ichikawa, Hiroshi [2 ]
Shimada, Yoshifumi [2 ]
Watanabe, Satoshi [3 ]
Kikuchi, Toshiaki [3 ]
Takada, Kazuki [4 ]
Nakanishi, Ryota [4 ]
Oki, Eiji [4 ]
Okamoto, Tatsuro [4 ]
Akazawa, Kouhei [5 ]
Lyle, Stephen [6 ]
Ling, Yiwei [7 ]
Takabe, Kazuaki [8 ,9 ]
Okuda, Shujiro [7 ]
Wakai, Toshifumi [2 ]
Tsuchida, Masanori [1 ]
机构
[1] Niigata Univ, Div Thorac & Cardiovasc Surg, Grad Sch Med & Dent Sci, Niigata, Japan
[2] Niigata Univ, Div Digest & Gen Surg, Grad Sch Med & Dent Sci, Niigata, Japan
[3] Niigata Univ, Dept Resp Med & Infect Dis, Grad Sch Med & Dent Sci, Niigata, Japan
[4] Kyushu Univ, Grad Sch Med Sci, Dept Surg & Sci, Fukuoka, Japan
[5] Niigata Univ Med & Dent Hosp, Dept Med Informat, Niigata, Japan
[6] Univ Massachusetts, Sch Med, Worcester, MA USA
[7] Niigata Univ, Div Bioinformat, Grad Sch Med & Dent Sci, Niigata, Japan
[8] Roswell Pk Canc Inst, Dept Surg Oncol, Breast Surg, Buffalo, NY 14263 USA
[9] SUNY Buffalo, Univ Buffalo Jacobs Sch Med & Biosci, Dept Surg, Buffalo, NY USA
基金
日本学术振兴会;
关键词
GROWTH-FACTOR RECEPTOR; SMOKING STATUS; CANCER; MUTATIONS; LANDSCAPE; SIGNATURE; BIOMARKER;
D O I
10.1038/s41598-017-18560-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Next-generation sequencing (NGS) has enabled comprehensive detection of genomic alterations in lung cancer. Ethnic differences may play a critical role in the efficacy of targeted therapies. The aim of this study was to identify and compare genomic alterations of lung adenocarcinoma between Japanese patients and the Cancer Genome Atlas (TCGA), which majority of patients are from the US. We also aimed to examine prognostic impact of additional genomic alterations in patients harboring EGFR mutations. Genomic alterations were determined in Japanese patients with lung adenocarcinoma (N = 100) using NGS-based sequencing of 415 known cancer genes, and correlated with clinical outcome. EGFR active mutations, i.e., those involving exon 19 deletion or an L858R point mutation, were seen in 43% of patients. Some differences in driver gene mutation prevalence were observed between the Japanese cohort described in the present study and the TCGA. Japanese cohort had significantly more genomic alterations in cell cycle pathway, i.e., CDKN2B and RB1 than TCGA. Concurrent mutations, in genes such as CDKN2B or RB1, were associated with worse clinical outcome in patients with EGFR active mutations. Our data support the utility of comprehensive sequencing to detect concurrent genomic variations that may affect clinical outcomes in this disease.
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页数:10
相关论文
共 30 条
[21]   Prognostic value of smoking status in operated non-small cell lung cancer [J].
Nia, PS ;
Weyler, J ;
Colpaert, C ;
Vermeulen, P ;
Van Marck, E ;
Van Schil, P .
LUNG CANCER, 2005, 47 (03) :351-359
[22]   New Targetable Oncogenes in Non-Small-Cell Lung Cancer [J].
Oxnard, Geoffrey R. ;
Binder, Adam ;
Jaenne, Pasi A. .
JOURNAL OF CLINICAL ONCOLOGY, 2013, 31 (08) :1097-1104
[23]   EGFR mutations in lung cancer:: Correlation with clinical response to gefitinib therapy [J].
Paez, JG ;
Jänne, PA ;
Lee, JC ;
Tracy, S ;
Greulich, H ;
Gabriel, S ;
Herman, P ;
Kaye, FJ ;
Lindeman, N ;
Boggon, TJ ;
Naoki, K ;
Sasaki, H ;
Fujii, Y ;
Eck, MJ ;
Sellers, WR ;
Johnson, BE ;
Meyerson, M .
SCIENCE, 2004, 304 (5676) :1497-1500
[24]   Prognostic implications of RB1 tumour suppressor gene alterations in the clinical outcome of human osteosarcoma: a meta-analysis [J].
Ren, W. ;
Gu, G. .
EUROPEAN JOURNAL OF CANCER CARE, 2017, 26 (01)
[25]   Lung cancer in never smokers - a different disease [J].
Sun, Sophie ;
Schiller, Joan H. ;
Gazdar, Adi F. .
NATURE REVIEWS CANCER, 2007, 7 (10) :778-790
[26]   Clinical application of amplicon-based next-generation sequencing to therapeutic decision making in lung cancer [J].
Takeda, M. ;
Sakai, K. ;
Terashima, M. ;
Kaneda, H. ;
Hayashi, H. ;
Tanaka, K. ;
Okamoto, K. ;
Takahama, T. ;
Yoshida, T. ;
Iwasa, T. ;
Shimizu, T. ;
Nonagase, Y. ;
Kudo, K. ;
Tomida, S. ;
Mitsudomi, T. ;
Saigo, K. ;
Ito, A. ;
Nakagawa, K. ;
Nishio, K. .
ANNALS OF ONCOLOGY, 2015, 26 (12) :2477-2482
[27]  
Tomizawa Y, 1999, CLIN CANCER RES, V5, P1139
[28]   Novel Biomarker Signature That May Predict Aggressive Disease in African American Men With Prostate Cancer [J].
Yamoah, Kosj ;
Johnson, Michael H. ;
Choeurng, Voleak ;
Faisal, Farzana A. ;
Yousefi, Kasra ;
Haddad, Zaid ;
Ross, Ashley E. ;
Alshalafa, Mohammed ;
Den, Robert ;
Lal, Priti ;
Feldman, Michael ;
Dicker, Adam P. ;
Klein, Eric A. ;
Davicioni, Elai ;
Rebbeck, Timothy R. ;
Schaeffer, Edward M. .
JOURNAL OF CLINICAL ONCOLOGY, 2015, 33 (25) :2789-U108
[29]   Smoking status as a prognostic factor in patients with stage I pulmonary adenocarcinoma [J].
Yoshino, I ;
Kawano, D ;
Oba, T ;
Yamazaki, K ;
Kometani, T ;
Maehara, Y .
ANNALS OF THORACIC SURGERY, 2006, 81 (04) :1189-1193
[30]   Association of Copy Number Loss of CDKN2B and PTCH1 With Poor Overall Survival in Patients With Pulmonary Squamous Cell Carcinoma [J].
Zhao, Yushi ;
Li, Ye ;
Lu, Hongguang ;
Chen, Jianxin ;
Zhang, Zhijie ;
Zhu, Zhong-Zheng .
CLINICAL LUNG CANCER, 2011, 12 (05) :328-334