DETECTOR: structural information guided artifact detection for super-resolution fluorescence microscopy image

被引:8
|
作者
Gao, Shan [1 ,2 ]
Xu, Fan [3 ]
Li, Hongjia [1 ,2 ]
Xue, Fudong [4 ]
Zhang, Mingshu [4 ]
Xu, Pingyong [2 ,4 ]
Zhang, Fa [1 ]
机构
[1] Chinese Acad Sci, High Performance Comp Res Ctr, Inst Comp Technol, Beijing 100190, Peoples R China
[2] Univ Chinese Acad Sci, Beijing 101408, Peoples R China
[3] Purdue Univ, Weldon Sch Biomed Engn, W Lafayette, IN 47907 USA
[4] Chinese Acad Sci, Inst Biophys, Key Lab RNA Biol, Beijing 100101, Peoples R China
基金
中国国家自然科学基金;
关键词
PLUG-IN; LOCALIZATION; STORM; PALM;
D O I
10.1364/BOE.431798
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Super-resolution fluorescence microscopy, with a spatial resolution beyond the diffraction limit of light, has become an indispensable tool to observe subcellular structures at a nanoscale level. To verify that the super-resolution images reflect the underlying structures of samples, the development of robust and reliable artifact detection methods has received widespread attention. However, the existing artifact detection methods are prone to report false alert artifacts because it relies on absolute intensity mismatch between the wide-field image and resolution rescaled super-resolution image. To solve this problem, we proposed DETECTOR, a structural information-guided artifact detection method for super-resolution images. It detects artifacts by computing the structural dissimilarity between the wide-field image and the resolution rescaled super-resolution image. To focus on structural similarity, we introduce a weight mask to weaken the influence of strong autofluorescence background and proposed a structural similarity index for super-resolution images, named MASK-SSIM. Simulations and experimental results demonstrated that compared with the state-of-the-art methods, DETECTOR has advantages in detecting structural artifacts in super-resolution images. It is especially suitable for wide-field images with strong autofluorescence background and super-resolution images of single molecule localization microscopy (SMLM). DETECTOR has extreme sensitivity to the weak signal region. Moreover, DETECTOR can guide data collection and parameter tuning during image reconstruction. (C) 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement
引用
收藏
页码:5751 / 5769
页数:19
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