From Dynamics to Membrane Organization: Experimental Breakthroughs Occasion a "Modeling Manifesto''

被引:21
作者
Lyman, Edward [1 ,2 ]
Hsieh, Chia-Lung [3 ]
Eggeling, Christian [4 ,5 ,6 ]
机构
[1] Univ Delaware, Dept Phys & Astrophys, Newark, DE 19716 USA
[2] Univ Delaware, Dept Chem & Biochem, Newark, DE 19716 USA
[3] Acad Sinica, Inst Atom & Mol Sci, Taipei, Taiwan
[4] Univ Oxford, Weatherall Inst Mol Med, MRC Human Immunol Unit, Oxford, England
[5] Friedrich Schiller Univ Jena, Inst Appl Opt, Jena, Germany
[6] Leibniz Inst Photon Technol, Jena, Germany
基金
美国国家卫生研究院; 英国医学研究理事会; 英国惠康基金;
关键词
FLUORESCENCE CORRELATION SPECTROSCOPY; SINGLE-PARTICLE TRACKING; GPI-ANCHORED PROTEINS; LIVE CELL-MEMBRANES; PLASMA-MEMBRANE; LIPID-MEMBRANES; LIVING CELLS; LABEL-FREE; PHASE-SEPARATION; CORTICAL ACTIN;
D O I
10.1016/j.bpj.2018.07.012
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
New experimental techniques, especially in the context of observing molecular dynamics, reveal the plasma membrane to be heterogeneous and "scale rich,'' from nanometers to microns and from microseconds to seconds. This is critical information, which shows that scale-dependent transport governs the molecular encounters that underlie cellular signaling. The data are rich and reaffirm the importance of the cortical cytoskeleton, protein aggregates, and lipidomic complexity on the statistics of molecular encounters. Moreover, the data demand simulation approaches with a particular set of features, hence the "manifesto.'' Together with the experimental data, simulations that satisfy these requirements hold the promise of a deeper understanding of membrane spatiotemporal organization. Several experimental breakthroughs in measuring molecular membrane dynamics are reviewed, the constraints that they place on simulations are discussed, and the status of simulation approaches that aim to meet them are detailed.
引用
收藏
页码:595 / 604
页数:10
相关论文
共 87 条
  • [31] Lipid Organization of the Plasma Membrane
    Ingolfsson, Helgi I.
    Melo, Manuel N.
    van Eerden, Floris J.
    Arnarez, Clement
    Lopez, Cesar A.
    Wassenaar, Tsjerk A.
    Periole, Xavier
    de Vries, Alex H.
    Tieleman, D. Peter
    Marrink, Siewert J.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (41) : 14554 - 14559
  • [32] Jain M K, 1977, Adv Lipid Res, V15, P1
  • [33] Diffusion of Integral Membrane Proteins in Protein-Rich Membranes
    Javanainen, Matti
    Martinez-Seara, Hector
    Metzler, Ralf
    Vattulainen, Ilpo
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2017, 8 (17): : 4308 - 4313
  • [34] Raft-based sphingomyelin interactions revealed by new fluorescent sphingomyelin analogs
    Kinoshita, Masanao
    Suzuki, Kenichi G. N.
    Matsumori, Nobuaki
    Takada, Misa
    Ano, Hikaru
    Morigaki, Kenichi
    Abe, Mitsuhiro
    Makino, Asami
    Kobayashi, Toshihide
    Hirosawa, Koichiro M.
    Fujiwara, Takahiro K.
    Kusumi, Akihiro
    Murata, Michio
    [J]. JOURNAL OF CELL BIOLOGY, 2017, 216 (04) : 1183 - 1204
  • [35] Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
    Klauda, Jeffery B.
    Venable, Richard M.
    Freites, J. Alfredo
    O'Connor, Joseph W.
    Tobias, Douglas J.
    Mondragon-Ramirez, Carlos
    Vorobyov, Igor
    MacKerell, Alexander D., Jr.
    Pastor, Richard W.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (23) : 7830 - 7843
  • [36] Single Molecule Diffusion of Membrane-Bound Proteins: Window into Lipid Contacts and Bilayer Dynamics
    Knight, Jefferson D.
    Lerner, Michael G.
    Marcano-Velazquez, Joan G.
    Pastor, Richard W.
    Falke, Joseph J.
    [J]. BIOPHYSICAL JOURNAL, 2010, 99 (09) : 2879 - 2887
  • [37] Membrane Compartmentalization Reducing the Mobility of Lipids and Proteins within a Model Plasma Membrane
    Koldso, Heidi
    Reddy, Tyler
    Fowler, Philip W.
    Duncan, Anna L.
    Sansom, Mark S. P.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2016, 120 (34) : 8873 - 8881
  • [38] Raft-based interactions of gangliosides with a GPI-anchored receptor
    Komura, Naoko
    Suzuki, Kenichi G. N.
    Ando, Hiromune
    Konishi, Miku
    Koikeda, Machi
    Imamura, Akihiro
    Chadda, Rahul
    Fujiwara, Takahiro K.
    Tsuboi, Hisae
    Sheng, Ren
    Cho, Wonhwa
    Furukawa, Koichi
    Furukawa, Keiko
    Yamauchi, Yoshio
    Ishida, Hideharu
    Kusumi, Akihiro
    Kiso, Makoto
    [J]. NATURE CHEMICAL BIOLOGY, 2016, 12 (06) : 402 - U51
  • [39] High-speed nanoscopic tracking of the position and orientation of a single virus
    Kukura, Philipp
    Ewers, Helge
    Mueller, Christian
    Renn, Alois
    Helenius, Ari
    Sandoghdar, Vahid
    [J]. NATURE METHODS, 2009, 6 (12) : 923 - U85
  • [40] Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: High-speed single-molecule tracking of membrane molecules
    Kusumi, A
    Nakada, C
    Ritchie, K
    Murase, K
    Suzuki, K
    Murakoshi, H
    Kasai, RS
    Kondo, J
    Fujiwara, T
    [J]. ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2005, 34 : 351 - U54