Mylodon darwinii DNA sequences from ancient fecal hair shafts

被引:16
|
作者
Clack, Andrew A. [1 ]
MacPhee, Ross D. E. [4 ]
Poinar, Hendrik N. [1 ,2 ,3 ]
机构
[1] McMaster Univ, McMaster Ancient DNA Ctr, Hamilton, ON L8S 4L9, Canada
[2] McMaster Univ, Dept Anthropol, Hamilton, ON L8S 4L9, Canada
[3] McMaster Univ, Dept Pathol & Mol Med, Hamilton, ON L8S 4L9, Canada
[4] Amer Museum Nat Hist, New York, NY 10024 USA
基金
加拿大自然科学与工程研究理事会;
关键词
Ancient DNA; Coprolites; Fecal hair; Mylodon darwinii; EXTINCT GROUND SLOTH; MOLECULAR ANALYSIS; GENOME; PHYLOGENY; DIET;
D O I
10.1016/j.aanat.2011.05.001
中图分类号
R602 [外科病理学、解剖学]; R32 [人体形态学];
学科分类号
100101 ;
摘要
Preserved hair has been increasingly used as an ancient DNA source in high throughput sequencing endeavors, and it may actually offer several advantages compared to more traditional ancient DNA substrates like bone. However, cold environments have yielded the most informative ancient hair specimens, while its preservation, and thus utility, in temperate regions is not well documented. Coprolites could represent a previously underutilized preservation substrate for hairs, which, if present therein, represent macroscopic packages of specific cells that are relatively simple to separate, clean and process. In this pilot study, we report amplicons 147-152 base pairs in length (w/primers) from hair shafts preserved in a south Chilean coprolite attributed to Darwin's extinct ground sloth, Mylodon darwinii. Our results suggest that hairs preserved in coprolites from temperate cave environments can serve as an effective source of ancient DNA. This bodes well for potential molecular-based population and phylogeographic studies on sloths, several species of which have been understudied despite leaving numerous coprolites in caves across of the Americas. (C) 2011 Published by Elsevier GmbH.
引用
收藏
页码:26 / 30
页数:5
相关论文
共 50 条
  • [41] Ancient DNA from amber fossil bees?
    Walden, KKO
    Robertson, HM
    MOLECULAR BIOLOGY AND EVOLUTION, 1997, 14 (10) : 1075 - 1077
  • [42] Enterobius vermicularis:: Ancient DNA from North and South American human coprolites
    Iñiguez, AM
    Reinhard, KJ
    Araújo, A
    Ferreira, LF
    Vicente, ACP
    MEMORIAS DO INSTITUTO OSWALDO CRUZ, 2003, 98 : 67 - 69
  • [43] Ancient DNA from Guam and the peopling of the Pacific
    Pugach, Irina
    Hubner, Alexander
    Hung, Hsiao-chun
    Meyer, Matthias
    Carson, Mike T.
    Stoneking, Mark
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (01)
  • [44] Estimating divergence times from DNA sequences
    Sjodin, Per
    McKenna, James
    Jakobsson, Mattias
    GENETICS, 2021, 217 (04)
  • [45] New ancient DNA sequences suggest high genetic diversity for the woolly mammoth (Mammuthus primigenius)
    YANG Shujuan
    and Department of Geology and Geophysics
    Progress in Natural Science, 2006, (04) : 379 - 386
  • [46] New ancient DNA sequences suggest high genetic diversity for the woolly mammoth (Mammuthus primigenius)
    Yang, SJ
    Lai, XL
    Shi, SH
    Cheng, SH
    Zhou, XG
    Yang, XJ
    Yang, H
    PROGRESS IN NATURAL SCIENCE, 2006, 16 (04) : 379 - 386
  • [47] How have studies of ancient DNA from sediments contributed to the reconstruction of Quaternary floras?
    Birks, H. John B.
    Birks, Hilary H.
    NEW PHYTOLOGIST, 2016, 209 (02) : 499 - 506
  • [48] Analysis of ancient DNA from coprolites:: a perspective with random amplified polymorphic DNA-polymerase chain reaction approach
    Iñiguez, AM
    Araújo, A
    Ferreira, LF
    Vicente, ACP
    MEMORIAS DO INSTITUTO OSWALDO CRUZ, 2003, 98 : 63 - 65
  • [49] Phenotypes from ancient DNA: Approaches, insights and prospects
    Gonzalez Fortes, Gloria
    Speller, Camilla F.
    Hofreiter, Michael
    King, Turi E.
    BIOESSAYS, 2013, 35 (08) : 690 - 695
  • [50] Evolutionary Patterns and Processes: Lessons from Ancient DNA
    Leonardi, Michela
    Librado, Pablo
    Sarkissian, Clio Der
    Schubert, Mikkel
    Alfarhan, Ahmed H.
    Alquraishi, Saleh A.
    Al-Rasheid, Khaled A. S.
    Gamba, Cristina
    Willerslev, Eske
    Orlando, Ludovic
    SYSTEMATIC BIOLOGY, 2017, 66 (01) : E1 - E29