Mylodon darwinii DNA sequences from ancient fecal hair shafts

被引:16
|
作者
Clack, Andrew A. [1 ]
MacPhee, Ross D. E. [4 ]
Poinar, Hendrik N. [1 ,2 ,3 ]
机构
[1] McMaster Univ, McMaster Ancient DNA Ctr, Hamilton, ON L8S 4L9, Canada
[2] McMaster Univ, Dept Anthropol, Hamilton, ON L8S 4L9, Canada
[3] McMaster Univ, Dept Pathol & Mol Med, Hamilton, ON L8S 4L9, Canada
[4] Amer Museum Nat Hist, New York, NY 10024 USA
基金
加拿大自然科学与工程研究理事会;
关键词
Ancient DNA; Coprolites; Fecal hair; Mylodon darwinii; EXTINCT GROUND SLOTH; MOLECULAR ANALYSIS; GENOME; PHYLOGENY; DIET;
D O I
10.1016/j.aanat.2011.05.001
中图分类号
R602 [外科病理学、解剖学]; R32 [人体形态学];
学科分类号
100101 ;
摘要
Preserved hair has been increasingly used as an ancient DNA source in high throughput sequencing endeavors, and it may actually offer several advantages compared to more traditional ancient DNA substrates like bone. However, cold environments have yielded the most informative ancient hair specimens, while its preservation, and thus utility, in temperate regions is not well documented. Coprolites could represent a previously underutilized preservation substrate for hairs, which, if present therein, represent macroscopic packages of specific cells that are relatively simple to separate, clean and process. In this pilot study, we report amplicons 147-152 base pairs in length (w/primers) from hair shafts preserved in a south Chilean coprolite attributed to Darwin's extinct ground sloth, Mylodon darwinii. Our results suggest that hairs preserved in coprolites from temperate cave environments can serve as an effective source of ancient DNA. This bodes well for potential molecular-based population and phylogeographic studies on sloths, several species of which have been understudied despite leaving numerous coprolites in caves across of the Americas. (C) 2011 Published by Elsevier GmbH.
引用
收藏
页码:26 / 30
页数:5
相关论文
共 50 条
  • [31] News From the West: Ancient DNA From a French Megalithic Burial Chamber
    Deguilloux, Marie-France
    Soler, Ludovic
    Pemonge, Marie-Helene
    Scarre, Chris
    Joussaume, Roger
    Laporte, Luc
    AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 2011, 144 (01) : 108 - 118
  • [32] Phylogenetic relationships of Chacodelphys (Marsupialia: Didelphidae: Didelphinae) based on "ancient" DNA sequences
    Diaz-Nieto, Juan F.
    Jansa, Sharon A.
    Voss, Robert S.
    JOURNAL OF MAMMALOGY, 2016, 97 (02) : 394 - 404
  • [33] To Clone or Not To Clone: Method Analysis for Retrieving Consensus Sequences In Ancient DNA Samples
    Winters, Misa
    Barta, Jodi Lynn
    Monroe, Cara
    Kemp, Brian M.
    PLOS ONE, 2011, 6 (06):
  • [34] Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
    de Filippo, Cesare
    Meyer, Matthias
    Pruefer, Kay
    BMC BIOLOGY, 2018, 16
  • [35] Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
    Cesare de Filippo
    Matthias Meyer
    Kay Prüfer
    BMC Biology, 16
  • [36] Vertebrate DNA in Fecal Samples from Bonobos and Gorillas: Evidence for Meat Consumption or Artefact?
    Hofreiter, Michael
    Kreuz, Eva
    Eriksson, Jonas
    Schubert, Grit
    Hohmann, Gottfried
    PLOS ONE, 2010, 5 (02):
  • [37] Nuclear DNA Typing From Ancient Teeth
    Sosa, Cecilia
    Baeta, Miriam
    Nunez, Carolina
    Casalod, Yolanda
    Luna, Aurelio
    Martinez-Jarreta, Begona
    AMERICAN JOURNAL OF FORENSIC MEDICINE AND PATHOLOGY, 2012, 33 (03) : 211 - 214
  • [38] Authenticated DNA from ancient wood remains
    Liepelt, Sascha
    Sperisen, Christoph
    Deguilloux, Marie-France
    Petit, Remy J.
    Kissling, Roy
    Spencer, Matthew
    De Beaulieu, Jacques-Louis
    Taberlet, Pierre
    Gielly, Ludovic
    Ziegenhagen, Birgit
    ANNALS OF BOTANY, 2006, 98 (05) : 1107 - 1111
  • [39] Inference of natural selection from ancient DNA
    Dehasque, Marianne
    Avila-Arcos, Maria C.
    Diez-del-Molino, David
    Fumagalli, Matteo
    Guschanski, Katerina
    Lorenzen, Eline D.
    Malaspinas, Anna-Sapfo
    Marques-Bonet, Tomas
    Martin, Michael D.
    Murray, Gemma G. R.
    Papadopulos, Alexander S. T.
    Therkildsen, Nina Overgaard
    Wegmann, Daniel
    Dalen, Love
    Foote, Andrew D.
    EVOLUTION LETTERS, 2020, 4 (02) : 94 - 108
  • [40] Inference of Population Structure from Ancient DNA
    Joseph, Tyler A.
    Pe'er, Itsik
    RESEARCH IN COMPUTATIONAL MOLECULAR BIOLOGY, RECOMB 2018, 2018, 10812 : 90 - 104