The complete chloroplast genome sequence of Fokienia hodginsii (Cupressaceae), an endangered tree

被引：0
|
作者：
Du, Xiaomin [1 ]
Chen, Xiaodan [1 ]
Ren, Xiaolong [1 ]
Xin, Guiliang [1 ]
Jia, Guolun [1 ]
Liu, Wenzhe [1 ]
机构：
[1] Northwest Univ, Key Lab Resource Biol & Biotechnol Western China, Minist Educ, Sch Life Sci, Xian 710069, Shaanxi, Peoples R China
来源：
CONSERVATION GENETICS RESOURCES | 2018年 / 10卷 / 04期
基金：
中国国家自然科学基金;
关键词：
Chloroplast genome; Fokienia hodginsii; Phylogenetic analysis; Species conservation;
D O I：
10.1007/s12686-017-0937-4
中图分类号：
X176 [生物多样性保护];
学科分类号：
090705 ;
摘要：
Fokienia hodginsii: is (Cupressaceae) an endangered tree species endemic to China, Vietnam and Laos. The complete chloroplast (cp) genome sequence of the F. hodginsii was determined using Illumina pair-end sequencing data. The circular genome is 127,777 bp long with 116 single copy genes and two duplicated genes (trnI-CAU, trnQ-UUG). The genome contains 120 genes, including 83 protein-coding genes, four ribosomal RNA genes and 33 transfer RNA genes. Fifteen genes have a single intron, and two genes (rps12 and ycf3) have a couple of introns. Its cp genome does not contain canonical IRs, and the overall A + T content is 65.0%. Further, phylogenetic analysis suggested that F. hodginsii is closely related to species of Chamaecyparis lawsoniana.
引用
收藏
页码：813 / 815
页数：3
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