Transparency of high-dimensional propensity score analyses: Guidance for diagnostics and reporting
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作者:
Tazare, John
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London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Tazare, John
[1
]
Wyss, Richard
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机构:
Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USALondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Wyss, Richard
[2
,3
]
Franklin, Jessica M.
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机构:
Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USALondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Franklin, Jessica M.
[2
,3
]
Smeeth, Liam
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London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Hlth Data Res HDR UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Smeeth, Liam
[1
,4
]
Evans, Stephen J. W.
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London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Evans, Stephen J. W.
[1
]
Wang, Shirley, V
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机构:
Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USALondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Wang, Shirley, V
[2
,3
]
Schneeweiss, Sebastian
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机构:
Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USALondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Schneeweiss, Sebastian
[2
,3
]
Douglas, Ian J.
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机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Hlth Data Res HDR UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Douglas, Ian J.
[1
,4
]
Gagne, Joshua J.
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机构:
Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USALondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Gagne, Joshua J.
[2
,3
]
Williamson, Elizabeth J.
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London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Hlth Data Res HDR UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
Williamson, Elizabeth J.
[1
,4
]
机构:
[1] London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, Keppel St, London WC1E 7HT, England
[2] Brigham & Womens Hosp, Div Pharmacoepidemiol & Pharmacoecon, 75 Francis St, Boston, MA 02115 USA
Purpose The high-dimensional propensity score (HDPS) is a semi-automated procedure for confounder identification, prioritisation and adjustment in large healthcare databases that requires investigators to specify data dimensions, prioritisation strategy and tuning parameters. In practice, reporting of these decisions is inconsistent and this can undermine the transparency, and reproducibility of results obtained. We illustrate reporting tools, graphical displays and sensitivity analyses to increase transparency and facilitate evaluation of the robustness of analyses involving HDPS. Methods Using a study from the UK Clinical Practice Research Datalink that implemented HDPS we demonstrate the application of the proposed recommendations. Results We identify seven considerations surrounding the implementation of HDPS, such as the identification of data dimensions, method for code prioritisation and number of variables selected. Graphical diagnostic tools include assessing the balance of key confounders before and after adjusting for empirically selected HDPS covariates and the identification of potentially influential covariates. Sensitivity analyses include varying the number of covariates selected and assessing the impact of covariates behaving empirically as instrumental variables. In our example, results were robust to both the number of covariates selected and the inclusion of potentially influential covariates. Furthermore, our HDPS models achieved good balance in key confounders. Conclusions The data-adaptive approach of HDPS and the resulting benefits have led to its popularity as a method for confounder adjustment in pharmacoepidemiological studies. Reporting of HDPS analyses in practice may be improved by the considerations and tools proposed here to increase the transparency and reproducibility of study results.
机构:
Cornell Univ, Dept Stat & Data Sci, 1188 Comstock Hall,129 Garden Ave, Ithaca, NY 14853 USACornell Univ, Dept Stat & Data Sci, 1188 Comstock Hall,129 Garden Ave, Ithaca, NY 14853 USA
Ning, Yang
Sida, Peng
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Microsoft Res, 14865 NE 36th St, Redmond, WA 98052 USACornell Univ, Dept Stat & Data Sci, 1188 Comstock Hall,129 Garden Ave, Ithaca, NY 14853 USA
Sida, Peng
Imai, Kosuke
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Harvard Univ, Dept Stat, One Oxford St, Cambridge, MA 02138 USACornell Univ, Dept Stat & Data Sci, 1188 Comstock Hall,129 Garden Ave, Ithaca, NY 14853 USA
机构:
Univ Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R ChinaUniv Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R China
Cheung, Edmund C. L.
Fan, Min
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Univ Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R ChinaUniv Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R China
Fan, Min
Chui, Celine S. L.
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Univ Hong Kong, Sch Nursing, Li Ka Shing Fac Med, Hong Kong, Peoples R ChinaUniv Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R China
Chui, Celine S. L.
Wong, Angel
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London Sch Hyg & Trop Med, London, EnglandUniv Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R China
Wong, Angel
Tazare, John R.
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London Sch Hyg & Trop Med, London, EnglandUniv Hong Kong, Li Ka Shing Fac Med, Dept Pharmacol & Pharm, Ctr Safe Medicat Practice & Res, Hong Kong, Peoples R China
机构:
Kaiser Permanente No Calif, Div Res, Oakland, CA 94612 USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
Neugebauer, Romain
Schmittdiel, Julie A.
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Kaiser Permanente No Calif, Div Res, Oakland, CA 94612 USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
Schmittdiel, Julie A.
Zhu, Zheng
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Kaiser Permanente No Calif, Div Res, Oakland, CA 94612 USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
Zhu, Zheng
Rassen, Jeremy A.
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机构:
Brigham & Womens Hosp, Dept Med, Div Pharmacoepidemiol & Pharmacoecon, Boston, MA 02115 USA
Harvard Univ, Sch Med, Boston, MA USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
Rassen, Jeremy A.
Seeger, John D.
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机构:
Brigham & Womens Hosp, Dept Med, Div Pharmacoepidemiol & Pharmacoecon, Boston, MA 02115 USA
Harvard Univ, Sch Med, Boston, MA USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
Seeger, John D.
Schneeweiss, Sebastian
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机构:
Brigham & Womens Hosp, Dept Med, Div Pharmacoepidemiol & Pharmacoecon, Boston, MA 02115 USA
Harvard Univ, Sch Med, Boston, MA USAKaiser Permanente No Calif, Div Res, Oakland, CA 94612 USA
机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Tazare, John
Smeeth, Liam
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机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Hlth Data Res UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Smeeth, Liam
Evans, Stephen J. W.
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机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Evans, Stephen J. W.
Williamson, Elizabeth
论文数: 0引用数: 0
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机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Hlth Data Res UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Williamson, Elizabeth
Douglas, Ian J.
论文数: 0引用数: 0
h-index: 0
机构:
London Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England
Hlth Data Res UK, London, EnglandLondon Sch Hyg & Trop Med, Fac Epidemiol & Populat Hlth, London WC1E 7HT, England