A merged molecular docking, ADME-T and dynamics approaches towards the genus of Arisaema as herpes simplex virus type 1 and type 2 inhibitors

被引:33
|
作者
Kant, Kamal [1 ]
Lal, Uma Ranjan [2 ]
Kumar, Anoop [3 ]
Ghosh, Manik [1 ]
机构
[1] Birla Inst Technol, Dept Pharmaceut Sci & Technol, Ranchi 835215, Jharkhand, India
[2] Shoolini Univ, Sch Pharmaceut Sci, Post Box 9, Solon 173212, Himachal Prades, India
[3] ISFCP, Dept Pharmacol, Moga 142001, Punjab, India
关键词
Herpes viruses; Phytoconstituents; Molecular docking; ADME-T; Molecular dynamics; ANTIVIRAL ACTIVITY; ANTIOXIDANT ACTIVITY; IN-VITRO; PROTEIN; FLAVONOIDS;
D O I
10.1016/j.compbiolchem.2018.12.005
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
An attempt toward screening of phytoconstituents (Arisaema genus) against herpes viruses (HSV-1 and HSV-2) was carried out using in silico approaches. Human HSV-1 and HSV-2 are accountable for cold sores genital herpes, respectively. Two drug targets, namely thymidine kinase (TK; PDB: 2ki5) serine protease (PDB: lat3) were selected for HSV-1 and HSV-2. Initially, molecular docking tool was employed to screened apex hits phytoconstituents against herpes infections. ADME-T studies of top ranked were also further highlighted to achieve their effectiveness. Following, molecular dynamics studies were also examined to further optimize the stability of ligands. Glide scores and binding interactions of phytoconstituents were compared with Acyclovir, the main drug used in treatment of HSV, the screened top hits exhibited more glide scores and better binding for both HSV-1 and HSV-2 receptors. Additionally, ADME-T showed an ideal range for top hits while molecular dynamics results also illustrated stability of models. Ultimately, the whole efforts reveal to top three most promising hits for HSV-1 (39, 21, 19) and HSV-2 (20, 51, 19) receptors which can be explored further in wet lab experiments as promising agents against HSV infections.
引用
收藏
页码:217 / 226
页数:10
相关论文
共 50 条
  • [31] Adeno-Associated Virus Type 2 Rep68 Can Bind to Consensus Rep-Binding Sites on the Herpes Simplex Virus 1 Genome
    Seyffert, Michael
    Glauser, Daniel L.
    Tobler, Kurt
    Georgiev, Oleg
    Vogel, Rebecca
    Vogt, Bernd
    Agundez, Leticia
    Linden, Michael
    Buening, Hildegard
    Ackermann, Mathias
    Fraefel, Cornel
    JOURNAL OF VIROLOGY, 2015, 89 (21) : 11150 - 11158
  • [32] Structure-based molecular docking and molecular dynamics simulations study for the identification of dipeptidyl peptidase 4 inhibitors in type 2 diabetes
    Chen, Xi
    Xue, Bin
    Wahab, Shadma
    Sultan, Armiya
    Khalid, Mohammad
    Yang, Song
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2025, 43 (03) : 1445 - 1458
  • [33] 3D-QSAR, molecular docking, molecular dynamics, and ADME/T analysis of marketed and newly designed flavonoids as inhibitors of Bcl-2 family proteins for targeting U-87 glioblastoma
    Poustforoosh, Alireza
    Faramarz, Sanaz
    Nematollahi, Mohammad Hadi
    Hashemipour, Hassan
    Tuzun, Burak
    Pardakhty, Abbas
    Mehrabani, Mehrnaz
    JOURNAL OF CELLULAR BIOCHEMISTRY, 2022, 123 (02) : 390 - 405
  • [34] Molecular docking and dynamic simulation analysis of natural polyphenols for identifying potential PTP1B inhibitors for type 2 diabetes
    Khona, Pratik
    Kabra, Uma
    INDIAN JOURNAL OF CHEMISTRY, 2024, 63 (05): : 506 - 517
  • [35] ANTIVIRAL ACTIVITY OF TRICHOTHECENE MYCOTOXINS (DEOXYNIVALENOL, FUSARENON-X, AND NIVALENOL) AGAINST HERPES-SIMPLEX VIRUS TYPE-1 AND TYPE-2
    TANI, N
    DOHI, Y
    ONJI, Y
    YONEMASU, K
    MICROBIOLOGY AND IMMUNOLOGY, 1995, 39 (08) : 635 - 637
  • [36] Augmentation of T helper type 1 immune response through intestinal immunity in murine cutaneous herpes simplex virus type 1 infection by probiotic Lactobacillus plantarum strain 06CC2
    Matsusaki, Tatsuya
    Takeda, Shiro
    Takeshita, Masahiko
    Arima, Yuo
    Tsend-Ayush, Chuluunbat
    Oyunsuren, Tsendesuren
    Sugita, Chihiro
    Yoshida, Hiroki
    Watanabe, Wataru
    Kurokawa, Masahiko
    INTERNATIONAL IMMUNOPHARMACOLOGY, 2016, 39 : 320 - 327
  • [37] Novel xylenyl-spaced bis-thiazoles/thiazines: synthesis, biological profile as herpes simplex virus type 1 inhibitors and in silico simulations
    Kassab, Refaie M.
    Al-Hussain, Sami A.
    Abdelmonsef, Aboubakr H.
    Zaki, Magdi E. A.
    Gomha, Sobhi M.
    Muhammad, Zeinab A.
    FUTURE MEDICINAL CHEMISTRY, 2024, 16 (01) : 27 - 41
  • [38] Synthesis of 2-phenyl-1H-imidazo[4,5-b]pyridine as type 2 diabetes inhibitors and molecular docking studies
    Taha, Muhammad
    Ismail, Nor Hadiani
    Imran, Syahrul
    Ainaa, Izzatul
    Selvaraj, Manikandan
    baharudin, Mohd syukri
    Ali, Muhammad
    Khan, Khalid Mohammed
    Uddin, Nizam
    MEDICINAL CHEMISTRY RESEARCH, 2017, 26 (05) : 916 - 928
  • [39] A 12-year molecular survey of clinical herpes simplex virus type 2 isolates demonstrates the circulation of clade A and B strains in Germany
    Schmidt-Chanasit, Jonas
    Bialonski, Alexandra
    Heinemann, Patrick
    Ulrich, Rainer G.
    Guenther, Stephan
    Rabenau, Holger F.
    Doerr, Hans Wilhelm
    JOURNAL OF CLINICAL VIROLOGY, 2010, 48 (03) : 208 - 211
  • [40] Wogonin inhibits in vitro herpes simplex virus type 1 and 2 infection by modulating cellular NF-κB and MAPK pathways
    Chu, Ying
    Lv, Xiaowen
    Zhang, Longfeng
    Fu, Xingli
    Song, Siwei
    Su, Airong
    Chen, Deyan
    Xu, Lianhong
    Wang, Yongfang
    Wu, Zhiwei
    Yun, Zhihua
    BMC MICROBIOLOGY, 2020, 20 (01)